Glyma15g20020 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g20020

Feature Type:	gene_model
Chromosome:	Gm15
Start:	17592663
stop:	17598364
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g20020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G52310	AT	Annotation by Michelle Graham. TAIR10: protein kinase family protein / C-type lectin domain-containing protein \| chr1:19478401-19480462 FORWARD LENGTH=552	SoyBase	E_val: 0	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007267	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell-cell signaling	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0009855	GO-bp	Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry	SoyBase	N/A	ISS
GO:0009887	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ morphogenesis	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0010050	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative phase change	SoyBase	N/A	ISS
GO:0010051	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation	SoyBase	N/A	ISS
GO:0010073	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem maintenance	SoyBase	N/A	ISS
GO:0010267	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference	SoyBase	N/A	ISS
GO:0016246	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA interference	SoyBase	N/A	ISS
GO:0035196	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0048439	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower morphogenesis	SoyBase	N/A	ISS
GO:0048519	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF213	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00059	PFAM	Lectin C-type domain	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_B9S040	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kinase, putative n=1 Tax=Ricinus communis RepID=B9S040_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MHI9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MHI9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g20020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g20020

Paralog	Evidence	Comments
Glyma09g08380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g20020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g181400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g20020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g20020

Limit To All Plant Sequences

>Glyma15g20020.2   sequence type=transcript   gene model=Glyma15g20020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAAAATGTGTTGGGAGCCAATAACAATCCCCTTCTACTTTCACCAGATCTGATTCCTCTTCAGAGTTCAAACCCTCTTTAATTGCATTTACACCTACCCACCAAAACACTAAAACCAACAAACCTGAATGGGAACTGCCCTACCCTCTTTACTTTAATTCACTCACAACAAGGGCACAAAAAAAAAAATGAACAAGTCTTCTGGTGCTGTTTTTCTCGCACGCTCTCGGCATACGATGTTTTCGTTTCCTAATTAGTAGCAGCGAGATTCTGAGGTTGTCGTGACCAAGGCCATGGAACTGAAATTTGTTCTCTTTCTGCTCCTTCTGCTTGCTGTTGCTGGTTATGGACTCGCTTCCAATGCGACACTGAACGAGACTTGTGGATACTTCGATGGTTCTCTCAATAGGGACCCTAAAGTGCCTTGTCCAATTGGTTGGATTATGGACCCTAACAAGACCAAGTGCTTTCTCCATGTTGGGAGGCCTCAATCTTGGAATGACTCAGAGACCTGTTGTAGTAAGTATGGTGGACATTTAGTGTCATTGACATCGCTTCCGGAGCTACAATTTGCCCAGGGCCTATGCGGTGAATCTATAAATAGTTGCTGGGTTGGTGGGCAAAGAGTCAACGCTACAGCTGGTAATCAGTGGATGTGGTCTGACAATTCACCTTGGAACAACTCCATATTTTCTATGGTTGAGGTTCCACCCCATTGTAATGGAACTGGACCATCCTGTCATAGGAACAGCACAGACAATTTGTGTACAGTAGTCACTAATAATTCAAACTCTCTCACGACTGAGAGATGCAACAATCCTCATGCTTCTCTATGTATACTTGATATAGATACAAAATGTAACCAAATGCACCGCCGCAGGGAATACTTTATCATCCTCACAGTGGTGAGTGCCTTGATACTCTCCACTACATTAGCAGTGGTAGTTTGGCTTCTTGTATATAAGCGAGGCAAGAAAAGAAGGCGGTCTAGAAAACTATCTATACCAGGAGCTTCTCTTCCATCATGGAAAGTTTTTACCAAAGAGGAATTAAGGTCAATTACAAAGAATTTCAGTGAAGGTAACCGTCTTGTTGGTGATACCAAGACTGGTGGTACATACAGTGGGGTTGTATCAGATGGTTCGAAGGTTGCAGTTAAGAGATTAAAGAGGTCAAACTTTCAGAGGAAAAAGGAGTTCTATTCTGAAATTGGCAGGGTCGCTAGGCTTCGTCATCCTAATCTAGTGGCTGTGATGGGATGCTGCTATGATCATGGTGACCGCTACATTGTTTATGAGTTTGTAGCTAATGGGCCCTTAGATAAATGGTTACATCATATACCAAGGGGAGGTCGCAGCTTAGATTGGGCTATGAGGATGAAAATTGCAACAACACTTGCTCAAGGAATTGCGTTTCTCCATGACAAGGTTAAGCCACAAGTTGTGCATCGAGATATACGCACTAGCAACGTACTGCTGGATGAGGAATTTGGAGCACGCCTTATGGGGGTTGGTCTGTCCAAGTTCGTGCCATATGAGGTAATGCATGAGAGGACTGTGATGGCAGGTGGAACTTATGGATATCTTGCTCCGGAGTTTGTGTACAGAAACGAGCTCACAACAAAGAGTGACGTATATAGTTTCGGTGTGCTACTACTTGAAATAGTAAGTGGACGTAGACCTGCACAGGCAGTGGATTCTGTGGGTTGGCAGAGTATATTTGAATGGGCGACACCTCTTGTGCAAGCTCATCGCTATCATGAACTCTTGGATCTTCATATAACTTCCTCCTCTTCTAGTATCATCCCAGAGGCTAGTACCATCCAAAAGGTGGTTGACCTCGTTTATTCTTGCACGCAGCATGTCCCGTCTATGCGCCCTAGAATGTCTCATGTCTTTCACCAGCTGCAACAGATTACCCAGCCACATGCAAAGTAAAGCTAATCACTACTAGTCTTGACCTTAAGTTTCTGTATAACTACAAAGTGGAGGGAGTTTTTGTTTTTACATATAACAGATATTTATGTAATTTAACCTGCCCTTTTTTAGGGTCGAGACTAAATCAAGTGGGAATTAGAGTTAGCCCAGGCAGGCATATTCTGCCAGACAATATTTGATGTCATACATGTAATGTAGGTGTAATTGTACTATTGATGGAATTGTAACCCCATTTGTCATTCTTAGAAAAATTAAAAAATGGATAACATAAAAAGGAAACTGAAGTGTGAAGGCAGCATCTGTTCTATGGTTATGTTTATGTAAGCAGCTTAATTGTTTATTTAATATAAAAGAGTTTATGTCACAAATTAAATTAT

Coding sequences of Glyma15g20020

Limit To All Plant Sequences

>Glyma15g20020.1   sequence type=CDS   gene model=Glyma15g20020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCCTAACAAGACCAAGTGCTTTCTCCATGTTGGGAGGCCTCAATCTTGGAATGACTCAGAGACCTGTTGTAGTAAGTATGGTGGACATTTAGTGTCATTGACATCGCTTCCGGAGCTACAATTTGCCCAGGGCCTATGCGGTGAATCTATAAATAGTTGCTGGGTTGGTGGGCAAAGAGTCAACGCTACAGCTGGTAATCAGTGGATGTGGTCTGACAATTCACCTTGGAACAACTCCATATTTTCTATGGTTGAGGTTCCACCCCATTGTAATGGAACTGGACCATCCTGTCATAGGAACAGCACAGACAATTTGTGTACAGTAGTCACTAATAATTCAAACTCTCTCACGACTGAGAGATGCAACAATCCTCATGCTTCTCTATGTATACTTGATATAGATACAAAATGTAACCAAATGCACCGCCGCAGGGAATACTTTATCATCCTCACAGTGGTGAGTGCCTTGATACTCTCCACTACATTAGCAGTGGTAGTTTGGCTTCTTGTATATAAGCGAGGCAAGAAAAGAAGGCGGTCTAGAAAACTATCTATACCAGGAGCTTCTCTTCCATCATGGAAAGTTTTTACCAAAGAGGAATTAAGGTCAATTACAAAGAATTTCAGTGAAGGTAACCGTCTTGTTGGTGATACCAAGACTGGTGGTACATACAGTGGGGTTGTATCAGATGGTTCGAAGGTTGCAGTTAAGAGATTAAAGAGGTCAAACTTTCAGAGGAAAAAGGAGTTCTATTCTGAAATTGGCAGGGTCGCTAGGCTTCGTCATCCTAATCTAGTGGCTGTGATGGGATGCTGCTATGATCATGGTGACCGCTACATTGTTTATGAGTTTGTAGCTAATGGGCCCTTAGATAAATGGTTACATCATATACCAAGGGGAGGTCGCAGCTTAGATTGGGCTATGAGGATGAAAATTGCAACAACACTTGCTCAAGGAATTGCGTTTCTCCATGACAAGGTTAAGCCACAAGTTGTGCATCGAGATATACGCACTAGCAACGTACTGCTGGATGAGGAATTTGGAGCACGCCTTATGGGGGTTGGTCTGTCCAAGTTCGTGCCATATGAGGTAATGCATGAGAGGACTGTGATGGCAGGTGGAACTTATGGATATCTTGCTCCGGAGTTTGTGTACAGAAACGAGCTCACAACAAAGAGTGACGTATATAGTTTCGGTGTGCTACTACTTGAAATAGTAAGTGGACGTAGACCTGCACAGGCAGTGGATTCTGTGGGTTGGCAGAGTATATTTGAATGGGCGACACCTCTTGTGCAAGCTCATCGCTATCATGAACTCTTGGATCTTCATATAACTTCCTCCTCTTCTAGTATCATCCCAGAGGCTAGTACCATCCAAAAGGTGGTTGACCTCGTTTATTCTTGCACGCAGCATGTCCCGTCTATGCGCCCTAGAATGTCTCATGTCTTTCACCAGCTGCAACAGATTACCCAGCCACATGCAAAGTAA

>Glyma15g20020.2   sequence type=CDS   gene model=Glyma15g20020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACTGAAATTTGTTCTCTTTCTGCTCCTTCTGCTTGCTGTTGCTGGTTATGGACTCGCTTCCAATGCGACACTGAACGAGACTTGTGGATACTTCGATGGTTCTCTCAATAGGGACCCTAAAGTGCCTTGTCCAATTGGTTGGATTATGGACCCTAACAAGACCAAGTGCTTTCTCCATGTTGGGAGGCCTCAATCTTGGAATGACTCAGAGACCTGTTGTAGTAAGTATGGTGGACATTTAGTGTCATTGACATCGCTTCCGGAGCTACAATTTGCCCAGGGCCTATGCGGTGAATCTATAAATAGTTGCTGGGTTGGTGGGCAAAGAGTCAACGCTACAGCTGGTAATCAGTGGATGTGGTCTGACAATTCACCTTGGAACAACTCCATATTTTCTATGGTTGAGGTTCCACCCCATTGTAATGGAACTGGACCATCCTGTCATAGGAACAGCACAGACAATTTGTGTACAGTAGTCACTAATAATTCAAACTCTCTCACGACTGAGAGATGCAACAATCCTCATGCTTCTCTATGTATACTTGATATAGATACAAAATGTAACCAAATGCACCGCCGCAGGGAATACTTTATCATCCTCACAGTGGTGAGTGCCTTGATACTCTCCACTACATTAGCAGTGGTAGTTTGGCTTCTTGTATATAAGCGAGGCAAGAAAAGAAGGCGGTCTAGAAAACTATCTATACCAGGAGCTTCTCTTCCATCATGGAAAGTTTTTACCAAAGAGGAATTAAGGTCAATTACAAAGAATTTCAGTGAAGGTAACCGTCTTGTTGGTGATACCAAGACTGGTGGTACATACAGTGGGGTTGTATCAGATGGTTCGAAGGTTGCAGTTAAGAGATTAAAGAGGTCAAACTTTCAGAGGAAAAAGGAGTTCTATTCTGAAATTGGCAGGGTCGCTAGGCTTCGTCATCCTAATCTAGTGGCTGTGATGGGATGCTGCTATGATCATGGTGACCGCTACATTGTTTATGAGTTTGTAGCTAATGGGCCCTTAGATAAATGGTTACATCATATACCAAGGGGAGGTCGCAGCTTAGATTGGGCTATGAGGATGAAAATTGCAACAACACTTGCTCAAGGAATTGCGTTTCTCCATGACAAGGTTAAGCCACAAGTTGTGCATCGAGATATACGCACTAGCAACGTACTGCTGGATGAGGAATTTGGAGCACGCCTTATGGGGGTTGGTCTGTCCAAGTTCGTGCCATATGAGGTAATGCATGAGAGGACTGTGATGGCAGGTGGAACTTATGGATATCTTGCTCCGGAGTTTGTGTACAGAAACGAGCTCACAACAAAGAGTGACGTATATAGTTTCGGTGTGCTACTACTTGAAATAGTAAGTGGACGTAGACCTGCACAGGCAGTGGATTCTGTGGGTTGGCAGAGTATATTTGAATGGGCGACACCTCTTGTGCAAGCTCATCGCTATCATGAACTCTTGGATCTTCATATAACTTCCTCCTCTTCTAGTATCATCCCAGAGGCTAGTACCATCCAAAAGGTGGTTGACCTCGTTTATTCTTGCACGCAGCATGTCCCGTCTATGCGCCCTAGAATGTCTCATGTCTTTCACCAGCTGCAACAGATTACCCAGCCACATGCAAAGTAA

Predicted protein sequences of Glyma15g20020

Limit To All Plant Sequences

>Glyma15g20020.1   sequence type=predicted peptide   gene model=Glyma15g20020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPNKTKCFLHVGRPQSWNDSETCCSKYGGHLVSLTSLPELQFAQGLCGESINSCWVGGQRVNATAGNQWMWSDNSPWNNSIFSMVEVPPHCNGTGPSCHRNSTDNLCTVVTNNSNSLTTERCNNPHASLCILDIDTKCNQMHRRREYFIILTVVSALILSTTLAVVVWLLVYKRGKKRRRSRKLSIPGASLPSWKVFTKEELRSITKNFSEGNRLVGDTKTGGTYSGVVSDGSKVAVKRLKRSNFQRKKEFYSEIGRVARLRHPNLVAVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPQVVHRDIRTSNVLLDEEFGARLMGVGLSKFVPYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLVQAHRYHELLDLHITSSSSSIIPEASTIQKVVDLVYSCTQHVPSMRPRMSHVFHQLQQITQPHAK*

>Glyma15g20020.2   sequence type=predicted peptide   gene model=Glyma15g20020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELKFVLFLLLLLAVAGYGLASNATLNETCGYFDGSLNRDPKVPCPIGWIMDPNKTKCFLHVGRPQSWNDSETCCSKYGGHLVSLTSLPELQFAQGLCGESINSCWVGGQRVNATAGNQWMWSDNSPWNNSIFSMVEVPPHCNGTGPSCHRNSTDNLCTVVTNNSNSLTTERCNNPHASLCILDIDTKCNQMHRRREYFIILTVVSALILSTTLAVVVWLLVYKRGKKRRRSRKLSIPGASLPSWKVFTKEELRSITKNFSEGNRLVGDTKTGGTYSGVVSDGSKVAVKRLKRSNFQRKKEFYSEIGRVARLRHPNLVAVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPQVVHRDIRTSNVLLDEEFGARLMGVGLSKFVPYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLVQAHRYHELLDLHITSSSSSIIPEASTIQKVVDLVYSCTQHVPSMRPRMSHVFHQLQQITQPHAK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain