Glyma15g20010 - SoyBase

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Report for Sequence Feature Glyma15g20010

Feature Type:	gene_model
Chromosome:	Gm15
Start:	17588522
stop:	17591203
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g20010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF03703	PFAM	Bacterial membrane flanked domain	JGI		ISS
UniRef100_I1MHI8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHI8_SOYBN	SoyBase	E_val: 9.00E-178	ISS
UniRef100_Q2QNA4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QNA4_ORYSJ	SoyBase	E_val: 1.00E-83	ISS

Expression Patterns of Glyma15g20010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g20010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g181300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g20010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g20010

Limit To All Plant Sequences

>Glyma15g20010.1   sequence type=CDS   gene model=Glyma15g20010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGACGAGGGAGGAGGTAGTGGAAATAGAGAGGCTGGAGGAGAGTTTGTTGGAGAAGAACGAGCGAGAAGACGAGGAAGCGGTGCTTTATGCGGCGTCGTTTCGGGAAATGGAAGAGGGTTTCGTCAAGTACCAAACGGTGCAGTGGGTGCTTTACTCGGTGTTGCTGATTTTGGCGTGGGGCATTGGAATTCTGATGCTGCTTTATCTTCCTGTGAGAAGGTTTATACTTAGGAAGGATGTTCGTTCCAGAACGCTCTATCTCACTCCGAATGCCATTGTTTACAAGGTTACGAGGCCGGTATCGTTTCCGTGCTTTGGAGTGCTGAAGAAGGAGAAACACGTTTTGCTGCACTCTGTGGCAGATGTTGTGATTGAACAAGGATACTTGCAATCACTTTTCGGTGTATATTCTCTTAGAATTGAAAATGTTGGAGTTAGAAGGCCACCCAGTGATGATGTTAAAATCCAGGGCGTTGCAAATCCAAATGCTTTTAGGAAGGCTGTTATGATGCGTCTATCGAACATGAGAAATGAGATTTTGTCAAGACAGGTCTCTACATTAGAAGATGTTCCACATCATCTGATGATGTCTCCATCAATGTCATTGAAACATGATCCTAATCCTTCTGGGGAGCTGCTACTAATGCAGAAACTAGAGGAAGTTGGAAGCTCTGTCAAGAGAATTCAATCTTTATTTGAGGAGCAACAATCTCAAATAACAGAGTCCATAGATTGA

Predicted protein sequences of Glyma15g20010

Limit To All Plant Sequences

>Glyma15g20010.1   sequence type=predicted peptide   gene model=Glyma15g20010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTREEVVEIERLEESLLEKNEREDEEAVLYAASFREMEEGFVKYQTVQWVLYSVLLILAWGIGILMLLYLPVRRFILRKDVRSRTLYLTPNAIVYKVTRPVSFPCFGVLKKEKHVLLHSVADVVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVKIQGVANPNAFRKAVMMRLSNMRNEILSRQVSTLEDVPHHLMMSPSMSLKHDPNPSGELLLMQKLEEVGSSVKRIQSLFEEQQSQITESID*

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