Report for Sequence Feature Glyma15g19910
Feature Type: gene_model
Chromosome: Gm15
Start: 17408095
stop: 17409289
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g19910
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G19210 AT
Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr1:6626973-6627530 REVERSE LENGTH=185
SoyBase E_val: 3.00E-49 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0010200 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to chitin
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
PF00847 PFAM
AP2 domain
JGI ISS
UniRef100_G7IIR1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ethylene-responsive transcription factor RAP2-9 n=1 Tax=Medicago truncatula RepID=G7IIR1_MEDTR
SoyBase E_val: 1.00E-70 ISS
UniRef100_UPI000189D0E4 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000189D0E4 related cluster n=1 Tax=unknown RepID=UPI000189D0E4
SoyBase E_val: 3.00E-154 ISS
Expression Patterns of Glyma15g19910
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g19910
Paralog Evidence Comments
Glyma09g08330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g19910 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g180000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g19910
Coding sequences of Glyma15g19910
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g19910.2 sequence type=CDS gene model=Glyma15g19910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGAAGTCGAAGAGCGTGGAGAAACCTGCGGAGGAACAACAACGAGGTGGTGTTTCAGCGTACAGAGGAGTACGGAAGAGGAAGTGGGGGAAGTACGTGTCGGAAATTAGGCTGCCCAACAGCCGTCAAAGGATTTGGTTGGGTTCCTACGACAGCGCCGAAAAGGCGGCGCGTGCATTCGACGCGGCCATGTTCTGCTTACGTGGCAGCGGTGCCAACTTTAATTTCCCGAGCGACCGGCCCAACATCGCTGGCGGGAGGAACATGACGCCCTCGCAGATTCAGATCGCCGCGGCGCGTTTCGCCAATTCGGAGCCCCGAAAGGAGTGTTCGGGTAAACCCGTGGAGTCTTTGACTTCGATTGAGGAAACGACGTCGTTTCCAGTAAATTCGGATACGGATACATCTTCTCCTCTATCAGTAGTGACGATCCAAAACGACACCGAAGTAGCAACCGGGTCGTTTCCGGGTATATTTTCGGGTTTCGGGTCGGGTAATTTCGTCCCCGAATTCTCCGATTTTCCGAGCTTCGATGATTTCGGCCACGATTTCTTCGTGCATGAGCTTCCGGGTTTCGATTACGGAGAAGAGAACTTGGATGGGTTGATAATTCAGGACTCGTTCCTGTGGAATTTCTAA
Predicted protein sequences of Glyma15g19910
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g19910.2 sequence type=predicted peptide gene model=Glyma15g19910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVKSKSVEKPAEEQQRGGVSAYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGANFNFPSDRPNIAGGRNMTPSQIQIAAARFANSEPRKECSGKPVESLTSIEETTSFPVNSDTDTSSPLSVVTIQNDTEVATGSFPGIFSGFGSGNFVPEFSDFPSFDDFGHDFFVHELPGFDYGEENLDGLIIQDSFLWNF*