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Report for Sequence Feature Glyma15g19800

Feature Type:gene_model
Chromosome:Gm15
Start:17225976
stop:17229374
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g19800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G42880AT Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein | chr3:14954587-14956577 FORWARD LENGTH=633 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007169GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway SoyBaseN/AISS
GO:0080092GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of pollen tube growth SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF823Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
PF08263PFAM Leucine rich repeat N-terminal domain JGI ISS
UniRef100_G7IIP0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7IIP0_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MHH6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MHH6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g19800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g19800 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g179300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g19800
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g19800
>Glyma15g19800.1   sequence type=CDS   gene model=Glyma15g19800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCCGCTGTTCGAATCCACCACCACCTCTCATTCCTTTTCTTGTTCTTATTCTTCATCTCTTTCTCATGCGGGACTGAAACTGATTCCCTCCTCCACCTCAAGAAATCCCTCACTAACTCTGACCGCTCCCTCTCCTCGTGGATCCCAAACATCTCCCCATGCTCCGGCACGTGGCTCGGCGTGGTCTGCTTTGACAACACCATCACGGGCTTGCACCTCTCTGACCTTGGCCTCTCCGGCTCGATCGACGTCGATGCCCTCGTCGAGATCCGTAGCCTCCGCACCCTTAGCTTCATCAACAACTCCTTCTCAGGCCCCATTCCAAACTTCAACAAACTTGGCTCCATAAAGTCCCTTCTCCTCACCCAAAACCGCTTCTCCGGCACAATCCCCACCGACTTCTTCTCCACCTTAAACTCCCTCAAGAAACTTTGGCTCTCAGGCAACAACTTCTCTGGTGAAATCCCACAATCCCTAACACAACTCAAACTCTTGAAAGAACTCCACCTCGAATACAACTCGTTCTCAGGCCAGATACCAAACTTCAACCAAGATCTGAAGTCGCTGGATTTGTCCAACAACAAACTCCAAGGTGCAATTCCTGTAAGCTTGGCAAGGTTCGGCCCTAACTCTTTCGCAGGAAATGAAGGTCTCTGTGGTAAGCCCTTAGAGAAGACTTGTGGTGATGATGATGGGTCTTCTTTGTTTTCTCTTCTAAGTAATGTTAACGAGGAAAAATACGATACGAGTTGGGCGACGAAGGTGATTGTAATATTGGTTATAGCAGTGGTGGCGGCAATGATATTTCTGTTCGTGAAGAGGAGTCGGAGGGGGGATGGGGAGTTGAGGGTGGTGAGCAGGAGCAGGAGCAACAGCACAGAGGAGGTATTGATGGTGCAGGTACCTAGCATGAGGGGGGGCGTAGGAGATAAGAAGAAGGAAGGAAATAAAAGAGGGGATATTGTGATGGTGAATGAGGAGAGGGGCGTATTTGGGCTTCAGGATTTGATGAAGGCGTCAGCGGAGGTGCTAGGGAATGGGGGGTTGGGATCAATGTACAAGGCGATGATGGGGACAGGGTTGTGCGTGGTGGTGAAGAGGATGAGGGAGATGAATAAGATCGGGAAGGACGTGTTTGACGCTGAGATGAGGCAGTTCGGGAGGATACGACACCGGAATATCATCACGCCACTCGCTTACCATTACCGAAGGGAGGAGAAGCTCTTTATTACTGAGTACATGCCCAAGGGAAGCTTGTTGTATGTCTTGCATGGTGACAGAGGAACATCCCATTCTGAGTTAACTTGGCCTACACGTTTGAACATTGTTAAGGGAATTGCAAGAGGGTTGAAATTCCTTTACTCTGAATTTTCCACCTACGACCTGCCCCACGGGAACCTCAAGTCCAGCAACGTTCTTCTAACTGATGATTACGAGCCTCTCTTGAGTGACTACGCCTTTCAGCCACTGATCAACCCCAAGGTCTCCGTGCAGGCATTGTTCGCCTTCAAATCCCCAGATTTTGTTCAGAATCAGAAGGTTTCGCAGAAGACCGATGTTTACTGCCTCGGTGTCATCATTCTTGAGATCATCACAGGGAAGTTCCCTTCCCAGTATCACAGCAATGGCAAGGGTGGCACTGATGTTGTGCAATGGGCCTTCACCGCAATTTCTGAGGGAACAGAAGCAGAGTTGATCGATTCGGAGTTACCAAACGACGCGAATTCGCGCAAGAACATGCTGCATCTTCTACACATTGGGGCTTGTTGCGCTGAGAGCAACCCTGAACAAAGACTAAACATGAAGGAAGCTGTTAGAAGGATAGAGGAGGTACAGGTTTAA
Predicted protein sequences of Glyma15g19800
>Glyma15g19800.1   sequence type=predicted peptide   gene model=Glyma15g19800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAAVRIHHHLSFLFLFLFFISFSCGTETDSLLHLKKSLTNSDRSLSSWIPNISPCSGTWLGVVCFDNTITGLHLSDLGLSGSIDVDALVEIRSLRTLSFINNSFSGPIPNFNKLGSIKSLLLTQNRFSGTIPTDFFSTLNSLKKLWLSGNNFSGEIPQSLTQLKLLKELHLEYNSFSGQIPNFNQDLKSLDLSNNKLQGAIPVSLARFGPNSFAGNEGLCGKPLEKTCGDDDGSSLFSLLSNVNEEKYDTSWATKVIVILVIAVVAAMIFLFVKRSRRGDGELRVVSRSRSNSTEEVLMVQVPSMRGGVGDKKKEGNKRGDIVMVNEERGVFGLQDLMKASAEVLGNGGLGSMYKAMMGTGLCVVVKRMREMNKIGKDVFDAEMRQFGRIRHRNIITPLAYHYRREEKLFITEYMPKGSLLYVLHGDRGTSHSELTWPTRLNIVKGIARGLKFLYSEFSTYDLPHGNLKSSNVLLTDDYEPLLSDYAFQPLINPKVSVQALFAFKSPDFVQNQKVSQKTDVYCLGVIILEIITGKFPSQYHSNGKGGTDVVQWAFTAISEGTEAELIDSELPNDANSRKNMLHLLHIGACCAESNPEQRLNMKEAVRRIEEVQV*






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