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Report for Sequence Feature Glyma15g19771

Feature Type:gene_model
Chromosome:Gm15
Start:17164141
stop:17165850
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g19771
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G62710AT Annotation by Michelle Graham. TAIR10: beta vacuolar processing enzyme | chr1:23224070-23226857 REVERSE LENGTH=486 SoyBaseE_val: 9.00E-36ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0006624GO-bp Annotation by Michelle Graham. GO Biological Process: vacuolar protein processing SoyBaseN/AISS
GO:0004197GO-mf Annotation by Michelle Graham. GO Molecular Function: cysteine-type endopeptidase activity SoyBaseN/AISS
PTHR12000Panther HEMOGLOBINASE FAMILY MEMBER JGI ISS
PTHR12000:SF2Panther HEMOGLOBINASE JGI ISS
PF01650PFAM Peptidase C13 family JGI ISS
UniRef100_I1MUX2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUX2_SOYBN SoyBaseE_val: 1.00E-57ISS
UniRef100_P49045UniRef Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar-processing enzyme n=1 Tax=Glycine max RepID=VPE_SOYBN SoyBaseE_val: 1.00E-57ISS

Expression Patterns of Glyma15g19771
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g19771 not represented in the dataset
Glyma15g19771 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g19771 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g179000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g19771
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g19771
>Glyma15g19771.1   sequence type=CDS   gene model=Glyma15g19771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGTGCCCATTAGAGTGCACGGTGCAGCCGCGAGGTCGAACCGGAAGGAGTGGGACTTAGTCATAAAGTTACTGACTGAACTGATGGATGCTGACTCGGATGAAGTGGGAACACGATGGGCGATTCTCATGGTTGGTTCAAACGGCTATGGAAACTACAGGCATCAAGTAAATGTGTGCCAAGCGTACCAGTTGCTGATAAAAGGTGGACTAAAAGAAGAGAACATAGTGGTGTTTATGTACAATGACATAGCTTCCAACCAGTCGAATCCTAGACATGGAGTCATCATCAACCACCCAGAGGGAGAATATCTGTATGCTGGTGTTCCTAAGCACACAGACGCTGCTAGTGAATTATACAATACCCACGACCTCACGCTCGTGTCTTAA
Predicted protein sequences of Glyma15g19771
>Glyma15g19771.1   sequence type=predicted peptide   gene model=Glyma15g19771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVPIRVHGAAARSNRKEWDLVIKLLTELMDADSDEVGTRWAILMVGSNGYGNYRHQVNVCQAYQLLIKGGLKEENIVVFMYNDIASNQSNPRHGVIINHPEGEYLYAGVPKHTDAASELYNTHDLTLVS*






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