Glyma15g19750 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g19750

Feature Type:	gene_model
Chromosome:	Gm15
Start:	17145555
stop:	17150444
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g19750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G23070	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF300) \| chr1:8174011-8175758 REVERSE LENGTH=403	SoyBase	E_val: 1.00E-144	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009062	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
KOG2641	KOG	Predicted seven transmembrane receptor - rhodopsin family	JGI		ISS
PTHR23423	Panther	ORGANIC SOLUTE TRANSPORTER-RELATED	JGI		ISS
PTHR23423:SF2	Panther	ORGANIC SOLUTE TRANSPORTER-RELATED	JGI		ISS
PF03619	PFAM	Domain of unknown function	JGI		ISS
UniRef100_G7IIM9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein 184C n=1 Tax=Medicago truncatula RepID=G7IIM9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MHH4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MHH4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g19750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g19750

Paralog	Evidence	Comments
Glyma09g08221	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g19750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g178900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g19750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g19750

Limit To All Plant Sequences

>Glyma15g19750.2   sequence type=CDS   gene model=Glyma15g19750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCAAATCACTTCTCAAACTTTGAAGGAACAAACAAAAACCTTCGCCCACCTGCTCTCATAATTGTGGGGTGTTCCATGCTTGTAGCTTTACTAGGAACAGCTTCGGCTAAACCGAAATTGGTTTACATTCAGGAGCAGAAGTGGATTGTTGTCGTTATTTCAATGGTCCCTATCTATGCTACCAAGTCCATTATTTCTTTGTGGAATCCTAGATTATCTCTAGCATGTGACATTTTAAGAAACTACTATGAAGCCTTTGCTCTGTATTCTTTTGGCAGATTCCTGATTGCTTGTCTTGGTATTGGTCCTGTGGCACTGGGAATAAAAAGGTTTTTAGAAACACTTCTGCTTCTCAAATCAATAACTTATATATTTGATGTTAAACTAACTTCTATGCTATCCTATCACCCCAAACCCCTAGTAAAAATATGTTGTGTTAATATCTTTTGCAACTTCTTTTGGCATCCATACAAGCTTGGAAAATATCTTCTCATAACAGAAAAATTTGGTCTTGTTCAATATATGATCCTGAAGACAGTTTATGCATTGTTAGCATTTATATTGGAATTGGCTGGTGTTTATGGCGATGGGGAATTCAAGTGGTACTACGGGTATCCATATATAGCAGTGGTATTGAACTTCAGCCAGATGTGGGCATTATACTACCTTGTTCAGTTCTATAATGTTACTCATGAGAGACTTCAACCAATAAAGCCACTTGCAAAGTTCATCAGCTTCAAGGCTATTGTGTTTGCTACTTGGTGGCAAGGTGTAGGTATTGCGGTATTGTGTACATTTGGAGTGCTACCCAATGAAGGAAAATTCCAAACTGGATTGCAAGATTTCTTAATTTCAATAGAGATGGCCATTGCAGCTGTTGCTCATGTGTTTGTATTTTCTGCAAAACCATATCATTTTCTTCCTCCTGCTGCATATGGAAAAATCACAAAGGAAACAATAGGAGCAGCCTTGGAGATAGATGAAGGGAGCAACGTCCAGGATATTGTTGTCGAAGGTGGTCAACGAGTTGTCAAGGATGTTGTACTCACAATAAATCAAGCAATAGGGCCAGTGGAAAAGGGAGTGACGAAAATTCAACAAACCTTCCATCACAAAATGGTGGTTTCATCATCATCATCAGAAGAAGAATCAGATATACAAATTGAGAAAGATGTCACTAAATCTTAG

Predicted protein sequences of Glyma15g19750

Limit To All Plant Sequences

>Glyma15g19750.2   sequence type=predicted peptide   gene model=Glyma15g19750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASNHFSNFEGTNKNLRPPALIIVGCSMLVALLGTASAKPKLVYIQEQKWIVVVISMVPIYATKSIISLWNPRLSLACDILRNYYEAFALYSFGRFLIACLGIGPVALGIKRFLETLLLLKSITYIFDVKLTSMLSYHPKPLVKICCVNIFCNFFWHPYKLGKYLLITEKFGLVQYMILKTVYALLAFILELAGVYGDGEFKWYYGYPYIAVVLNFSQMWALYYLVQFYNVTHERLQPIKPLAKFISFKAIVFATWWQGVGIAVLCTFGVLPNEGKFQTGLQDFLISIEMAIAAVAHVFVFSAKPYHFLPPAAYGKITKETIGAALEIDEGSNVQDIVVEGGQRVVKDVVLTINQAIGPVEKGVTKIQQTFHHKMVVSSSSSEEESDIQIEKDVTKS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain