SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g19731

Feature Type:gene_model
Chromosome:Gm15
Start:17135122
stop:17145058
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g19731
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G19110AT Annotation by Michelle Graham. TAIR10: inter-alpha-trypsin inhibitor heavy chain-related | chr1:6602270-6605766 FORWARD LENGTH=754 SoyBaseE_val: 5.00E-125ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009690GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinin metabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR10338Panther VON WILLEBRAND FACTOR, TYPE A DOMAIN CONTAINING JGI ISS
PTHR10338:SF8Panther INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN JGI ISS
PF00092PFAM von Willebrand factor type A domain JGI ISS
UniRef100_G7IGH7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Inter-alpha-trypsin inhibitor heavy chain H3 n=1 Tax=Medicago truncatula RepID=G7IGH7_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MHH3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MHH3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g19731
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g19731 not represented in the dataset
Glyma15g19731 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g19731
ParalogEvidenceComments
Glyma09g08210 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g19731 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g178800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g19731
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g19731
>Glyma15g19731.1   sequence type=CDS   gene model=Glyma15g19731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGGAGTTAAGCCCGACATGAAGCAACTGAGCAAGAAGGGCAGAGGGAGGCCAATAATGCGGTTCGCGAGGTCCTCAAAATCAGAGAGGTACTGCACCATCGTACTGCGTTGGAAAGTGAGGCATAATGCTGGGAGTATGGGTTTCTCGTATGAATCAGATGTTCTCTCATGGTCAAAAACCAATTTTAGCTTTACATATGTTGTGCCTGATTCTTCAAGTCATATAAGTAGTGGTGTTCTTTTGGAATCTCCATTGGTGGATGATTTTGATCAACGAGAGATGTTCTGCTTGTACCTTTCTCCTGAAAATCTAAAGGGTAGGAAGATATTCAGAAAGGACATTTTGTTTGTGATCGACATAAGTGGAAGCATGCGGGGAAAGCTAATGGATGATACAAAGAATGCACTATCAGTTGCTCTCGCTAAGCTCGATCTTGATGATTCATTTAGTATTATAGCATTTAATGGAGAGATATATCAATTTTCAAAATCAATGAAATTGGTTTCAAAGGATGCTGTTGAAAGGGCGATCGAGTGGATTAACATGAATTTTATTGAAGGGGGTGATACAAATATTTTGTATCCCTTAAACATGGCAATAAGGATGCTATCTGATGCTCAAAGTTCAGTTCCAATTATTTTCCTAGTTAAAGATGGAATTGTTGAAGATGAGAGACAAATATGTTCATTCTGTAATCACTATTTCTTGCGAATGCTTTCTATGATTGGTCGGGGCCAACATTTTGCAGCATTGGATCCTCAGATGCTGAAATTGTTTGAGAAAGCTTCATCCCTTGTTCTTGCAAATATTACAATGGGTATATTCAATGATGTGGATGACGTTGAGGTGTGCCCCTCTCACATTCTAGATCTTTCCTCAGATGGTCCATTGCTTTTATCTGGAAGATACAAGGGAAGTTTTTCCAAAGATTTTGAAATTAAAGGTGTCTTGCCTGTTTTCAGTAATTTTGTGATAGATATGAAGATTCAAGACGCTAAGGACATACCTGTACAAAGGATTTGTGCAAGATATCAAATAGAGTATCTTACTGCTCAAGCATGGCTCTCAAAAGATGAAAAATTAGAACAAAAGGTTGCAAAACTAGGCTTACAAACTGGCTTTATTTCCGATTCTTTTAAATGGATAAAATCTCACTTCCTTTCTTCTAAATCATGGCAAAAAGGTGTAAAAAAAAGCCATCCTCAGAGTGGAGCAAAAGAACAAGGGCAGAGAATTATTTTTCTCCCTCCCTTAGGTATAGGATTTGGCAACTTAACTGCAACTACAGAAAACATTCAACCGGGATCTGAAGAAACAAAAGGGCCTGATGGGGCTGAAATCTTTGTTAAGGCTTCCATAAATTGTTGTGGCACCTGCTGCAAGAACTTCTGTTGCATGTGCTGCATCCAGGTCTGTACCCAGATAAACATCCAATGTGCAATTGCATTTACTTAA
Predicted protein sequences of Glyma15g19731
>Glyma15g19731.1   sequence type=predicted peptide   gene model=Glyma15g19731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGVKPDMKQLSKKGRGRPIMRFARSSKSERYCTIVLRWKVRHNAGSMGFSYESDVLSWSKTNFSFTYVVPDSSSHISSGVLLESPLVDDFDQREMFCLYLSPENLKGRKIFRKDILFVIDISGSMRGKLMDDTKNALSVALAKLDLDDSFSIIAFNGEIYQFSKSMKLVSKDAVERAIEWINMNFIEGGDTNILYPLNMAIRMLSDAQSSVPIIFLVKDGIVEDERQICSFCNHYFLRMLSMIGRGQHFAALDPQMLKLFEKASSLVLANITMGIFNDVDDVEVCPSHILDLSSDGPLLLSGRYKGSFSKDFEIKGVLPVFSNFVIDMKIQDAKDIPVQRICARYQIEYLTAQAWLSKDEKLEQKVAKLGLQTGFISDSFKWIKSHFLSSKSWQKGVKKSHPQSGAKEQGQRIIFLPPLGIGFGNLTATTENIQPGSEETKGPDGAEIFVKASINCCGTCCKNFCCMCCIQVCTQINIQCAIAFT*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo