SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g19681

Feature Type:gene_model
Chromosome:Gm15
Start:17067475
stop:17070008
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g19681
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G35740AT Annotation by Michelle Graham. TAIR10: DEAD/DEAH box RNA helicase family protein | chr4:16936788-16940172 FORWARD LENGTH=620 SoyBaseE_val: 1.00E-62ISS
GO:0006310GO-bp Annotation by Michelle Graham. GO Biological Process: DNA recombination SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008026GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity SoyBaseN/AISS
GO:0009378GO-mf Annotation by Michelle Graham. GO Molecular Function: four-way junction helicase activity SoyBaseN/AISS
GO:0036310GO-mf Annotation by Michelle Graham. GO Molecular Function: annealing helicase activity SoyBaseN/AISS
GO:0043138GO-mf Annotation by Michelle Graham. GO Molecular Function: 3'-5' DNA helicase activity SoyBaseN/AISS
PTHR13710Panther DNA HELICASE RECQ FAMILY MEMBER JGI ISS
PTHR13710:SF3Panther ATP-DEPENDENT DNA HELICASE JGI ISS
UniRef100_G7IGG6UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent DNA helicase Q1 n=1 Tax=Medicago truncatula RepID=G7IGG6_MEDTR SoyBaseE_val: 1.00E-110ISS
UniRef100_I1L1R3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L1R3_SOYBN SoyBaseE_val: 8.00E-130ISS

Expression Patterns of Glyma15g19681
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g19681 not represented in the dataset
Glyma15g19681 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g19681
ParalogEvidenceComments
Glyma09g08180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g19681 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g178500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g19681
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g19681
>Glyma15g19681.1   sequence type=CDS   gene model=Glyma15g19681   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCATCCAAAATGCCCCTGATTGCTTTCAATCAGATCGTTGAATATTGTGAAGGGTCTGGATGTCGCAGGAAAAGGATTCTCAAGAGTTTTGCAGAACAGGTAACTGTATCACTATGTGGAAAAACATGTGATGCCTGCAGACATCCAAACTTAGTTGCCAGATGTTTGGAGGATTTCACAACTGCTTGTGCTCTACGCCAGAAAAATGGTTCTTCTCGAATTTTTAGGACCAGTTCCACTGATGCAATTGACAGAGAACAGTTATCTGAATTCTGGAATCAGGATGAGGAAGCAAATGGATCAGAGGAAGATATACCTGATTCAGATGGTAGAAGTGTGGTTATTAGACTATACATTCATGTGGATGAATTTTCATTGGTGGATGGTAATGAGTTTGTCAACAACCTAACCCGGTCGAAGCTTCAATCCAAATTAGGAGTAAATGAAAAGCTTGCTATGTTACAACGGGCAGAAGAAAACTTCTATCGAAATAATAATGCTTACAAACAGAGCAACAAAGTTGACAAAAATGCTATTTCTGATCCAATGCGAGGAGCAAGCAGGCAAAGGTTACAAAATGCTCTAAAACAGGTTCAACAACGGCTTGACAACTTCAAGGTTGAAATGGAAACATCAGCATCTTTGCTAAAAGATGAATGCTACAAGAAATATGGCAAGGCTGGTAAATCATTCTATTATTTGCAAGTGGCAAGTACTTTGATACCAAAAAGTTCTTCATTTAATACCAAGTTGCCACAAATACCATCCTTCTCTGAATTCGTAAATAGTAGGAAAGCAAAAGGGGACCAATTACATGACACCAAAAAGCATTCATCAAGAGTCGAAAAGAAGATGAGGATATAG
Predicted protein sequences of Glyma15g19681
>Glyma15g19681.1   sequence type=predicted peptide   gene model=Glyma15g19681   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SSKMPLIAFNQIVEYCEGSGCRRKRILKSFAEQVTVSLCGKTCDACRHPNLVARCLEDFTTACALRQKNGSSRIFRTSSTDAIDREQLSEFWNQDEEANGSEEDIPDSDGRSVVIRLYIHVDEFSLVDGNEFVNNLTRSKLQSKLGVNEKLAMLQRAEENFYRNNNAYKQSNKVDKNAISDPMRGASRQRLQNALKQVQQRLDNFKVEMETSASLLKDECYKKYGKAGKSFYYLQVASTLIPKSSSFNTKLPQIPSFSEFVNSRKAKGDQLHDTKKHSSRVEKKMRI*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo