Glyma15g19660 - SoyBase

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Report for Sequence Feature Glyma15g19660

Feature Type:	gene_model
Chromosome:	Gm15
Start:	17033277
stop:	17037973
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g19660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G05910	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF567) \| chr2:2258512-2259376 REVERSE LENGTH=191	SoyBase	E_val: 2.00E-77	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04525	PFAM	Protein of unknown function (DUF567)	JGI		ISS
UniRef100_I1MHG5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHG5_SOYBN	SoyBase	E_val: 2.00E-152	ISS
UniRef100_Q01J32	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0140O07.11 protein n=3 Tax=Oryza sativa RepID=Q01J32_ORYSA	SoyBase	E_val: 3.00E-67	ISS

Expression Patterns of Glyma15g19660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g19660

Paralog	Evidence	Comments
Glyma09g08140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g19660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g178300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g19660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g19660

Limit To All Plant Sequences

>Glyma15g19660.3   sequence type=transcript   gene model=Glyma15g19660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATACATTAATGTTTGATGTTTTTTAATAAAAACTCTATTTTTAATTCCTTAACTAGAACCACTTGTTAGCATTTGCTTATTCAAAATATATATTTTTCTGAAAGACATTACAGTCTCTACAAAAGCAAGGGGATGATAGTTATGGCACTGGTTGATTTATTTATTGATTTAATAATTAATTTAATGTTTTAAAATATAAATCTATAGATTTAAACAAATAATACAAAATTATATTATTGTTCTTTTGTATACGACTTTTCTTTATTAAACAGTATCATGTAATAAATTGGGGTTTGTTAATTTCACAACAACAAAAAATCATGTTAATAAATTAGTTAAGATGTAAATTATAGCCACTTGTTCTCTAATTTTAGAAGATCCAAAACTCCAAAATCCAAATGCTCTTGAGATATCCGAGAAAACGACTATTGGCCGCGTCTCCATGATTCACATCTTCAGTCCACCACGTGTCATGAGCACGACGTTGACAACTATCTCGCTTGATTAGCTCTAGCGAATTTCAAAAGCTTTGGAGTTTGGACACTGTTTTGAAAATCCCTATCTAACGATTCTAACCACTTCGTACTTTATTTTTTGTCAACATTGCCCTGAGACTTCTCTGAAATCTCAAGGTTTTGGCACTCCATATGTTAATTTCCAACACAGCTAAAACCCCATATGGCAAGTCAATCTACCGTAACTAAAAGAGTAGTCTAACACGCCTACGCATCCTATCAATTGGGCTAATTATCAGAGAGAGAGAGAGAGAGAAAAAAAGGGTGTTAAGTTAAGCAATTCACATGTGAACATGCCCAAATTTTCATCTCATCCACAAGCAAACTCAACCAATAATGCCTCGTAAGATTCTTCTATCTCCTATACGTCAACACTTGCCAAACCTATAGGCTACAAGCATAGACCAAGAAGTCTAGTCACACAAGTTGGCATTTAGGGAAAGCCAACAAGTTTTACAACTATTGTGAGCAAGTAGAAAGATAGAGCCAAGAAGTTAATTTACGGTATTTACATACAAAAAGATATATAGAGAAAGAAATTGAGCATTAAGTGTTGGAAGATGAGCATGATGGCTATCATTAGCAAACTATATTGTTCATCTTCTCAGACGGTGCTTGGGGTCAGGAAGAGGCCTCATGTGGTGAATGGAGGGGGTTTTGTGGTCACGGATTGTAGTGGCCAGAGGGTTGTTTTCAGGGTTGATGGTTGTGGGATTCATGACACTAAGGGACAGTTGATTCTAAGAGATGGGGAAGGAGATGCTTTACTTCTCATGCGTCGAAAGGGAGGCATGGTTGAGGCCCTTGGCATTTACAAGAAGTGGAATGGTTATAGTGTAAACTATGAAGGATTACAGAGCCTGGTTTTCAGCTTGAAAGAGCCCAATAATTGTTGTTTGGTTAAGAACAATGCGATTAGAATCTCCATTGAACCCAGGAATTCTAGTAACAAGGGCTGGGACTTTGAGGTCAGGGGTTACTTCCCTGATAGGAGTTGTAGCATTGTTGATGTTAGAGGCAACGTAATAGCACAGGTTGGGGTGAACAAGGAAGTGGAGAAATTGATGGAAAGTAAGGATCTGTATCATGTGGTGGTGAAACCAGGGATCGATCAAGCGTTTGTTTTTGGAGTCATTGCCATCCTTGACTACATTTATGGCGAATCCACATACTGCAGAGTCCAAAATTGTGCTTAGCGTGCTGTGTTTTGCTGAATTATTATTTTATAATTAAAACCAATAGTGGTTTTTTCTCGTATGACAAATGTGTATATATGAAAGAAGCTAAAGGGGATAGAGAGGGTTTTGGAGGAATTAAGGGGACAATTAACCAGGTTAGGAAGATGCCTTGTATATTATGGAAGGGAAATTGGATTGTTACTTGCGTTAAGCAATTGCATGTAATTTCGTTAATTCGAATGACTGGTTTGACAATGACGAATGTGAAAGTTATTTAAGTATCGTTCCTAGTGCTTATCGTTTATAGGCTGATTTCGAATCTGTGTATAATTGATTGGTGATGAATGAGTTTGAAAAGTTTGGAACTTTATAAGTACCGATTAATTGAATAAATTAGGTACGGATTTTGATTAATTTGGTTGAAAAGA

Coding sequences of Glyma15g19660

Limit To All Plant Sequences

>Glyma15g19660.2   sequence type=CDS   gene model=Glyma15g19660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATGATGGCTATCATTAGCAAACTATATTGTTCATCTTCTCAGACGGTGCTTGGGGTCAGGAAGAGGCCTCATGTGGTGAATGGAGGGGGTTTTGTGGTCACGGATTGTAGTGGCCAGAGGGTTGTTTTCAGGGTTGATGGTTGTGGGATTCATGACACTAAGGGACAGTTGATTCTAAGAGATGGGGAAGGAGATGCTTTACTTCTCATGCGTCGAAAGGGAGGCATGGTTGAGGCCCTTGGCATTTACAAGAAGTGGAATGGTTATAGTGTAAACTATGAAGGATTACAGAGCCTGGTTTTCAGCTTGAAAGAGCCCAATAATTGTTGTTTGGTTAAGAACAATGCGATTAGAATCTCCATTGAACCCAGGAATTCTAGTAACAAGGGCTGGGACTTTGAGGTCAGGGGTTACTTCCCTGATAGGAGTTGTAGCATTGTTGATGTTAGAGGCAACGTAATAGCACAGGTTGGGGTGAACAAGGAAGTGGAGAAATTGATGGAAAGTAAGGATCTGTATCATGTGGTGGTGAAACCAGGGATCGATCAAGCGTTTGTTTTTGGAGTCATTGCCATCCTTGACTACATTTATGGCGAATCCACATACTGCAGAGTCCAAAATTGTGCTTAG

>Glyma15g19660.3   sequence type=CDS   gene model=Glyma15g19660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATGATGGCTATCATTAGCAAACTATATTGTTCATCTTCTCAGACGGTGCTTGGGGTCAGGAAGAGGCCTCATGTGGTGAATGGAGGGGGTTTTGTGGTCACGGATTGTAGTGGCCAGAGGGTTGTTTTCAGGGTTGATGGTTGTGGGATTCATGACACTAAGGGACAGTTGATTCTAAGAGATGGGGAAGGAGATGCTTTACTTCTCATGCGTCGAAAGGGAGGCATGGTTGAGGCCCTTGGCATTTACAAGAAGTGGAATGGTTATAGTGTAAACTATGAAGGATTACAGAGCCTGGTTTTCAGCTTGAAAGAGCCCAATAATTGTTGTTTGGTTAAGAACAATGCGATTAGAATCTCCATTGAACCCAGGAATTCTAGTAACAAGGGCTGGGACTTTGAGGTCAGGGGTTACTTCCCTGATAGGAGTTGTAGCATTGTTGATGTTAGAGGCAACGTAATAGCACAGGTTGGGGTGAACAAGGAAGTGGAGAAATTGATGGAAAGTAAGGATCTGTATCATGTGGTGGTGAAACCAGGGATCGATCAAGCGTTTGTTTTTGGAGTCATTGCCATCCTTGACTACATTTATGGCGAATCCACATACTGCAGAGTCCAAAATTGTGCTTAG

Predicted protein sequences of Glyma15g19660

Limit To All Plant Sequences

>Glyma15g19660.2   sequence type=predicted peptide   gene model=Glyma15g19660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMMAIISKLYCSSSQTVLGVRKRPHVVNGGGFVVTDCSGQRVVFRVDGCGIHDTKGQLILRDGEGDALLLMRRKGGMVEALGIYKKWNGYSVNYEGLQSLVFSLKEPNNCCLVKNNAIRISIEPRNSSNKGWDFEVRGYFPDRSCSIVDVRGNVIAQVGVNKEVEKLMESKDLYHVVVKPGIDQAFVFGVIAILDYIYGESTYCRVQNCA*

>Glyma15g19660.3   sequence type=predicted peptide   gene model=Glyma15g19660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMMAIISKLYCSSSQTVLGVRKRPHVVNGGGFVVTDCSGQRVVFRVDGCGIHDTKGQLILRDGEGDALLLMRRKGGMVEALGIYKKWNGYSVNYEGLQSLVFSLKEPNNCCLVKNNAIRISIEPRNSSNKGWDFEVRGYFPDRSCSIVDVRGNVIAQVGVNKEVEKLMESKDLYHVVVKPGIDQAFVFGVIAILDYIYGESTYCRVQNCA*

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