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Report for Sequence Feature Glyma15g19631

Feature Type:gene_model
Chromosome:Gm15
Start:17007111
stop:17010449
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g19631
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20635AT Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: keratin filament, chloroplast; CONTAINS InterPro DOMAIN/s: Keratin, high sulphur B2 protein (InterPro:IPR002494); Has 6153 Blast hits to 2882 proteins in 265 species: Archae - 6; Bacteria - 47; Metazoa - 4777; Fungi - 68; Plants - 187; Viruses - 30; Other Eukaryotes - 1038 (source: NCBI BLink). | chr5:6979314-6981767 REVERSE LENGTH=251 SoyBaseE_val: 4.00E-32ISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0045095GO-cc Annotation by Michelle Graham. GO Cellular Compartment: keratin filament SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_Q6AWT8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Guanine nucleotide-binding protein subunit gamma 3 n=1 Tax=Arabidopsis thaliana RepID=GG3_ARATH SoyBaseE_val: 2.00E-29ISS
UniRef100_UPI000233B8EEUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B8EE related cluster n=1 Tax=unknown RepID=UPI000233B8EE SoyBaseE_val: 8.00E-134ISS

Expression Patterns of Glyma15g19631
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g19631 not represented in the dataset
Glyma15g19631 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g19631
ParalogEvidenceComments
Glyma09g08131 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g19631 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g178100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g19631
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma15g19631
>Glyma15g19631.2   sequence type=transcript   gene model=Glyma15g19631   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATGGTAATTCAAAATTCGTTGCAGCCAGGCTCAGTTTCCATCAGATTCTCGCTGGTCACTGCCACTCTAGTCTTCATTTTTTTCCTCCTTATTTCCCCCCATGCCTGCAATAATAATGACTCTCTTTCTAGCCTCATTTATGACCCTTTTCCACTTTCCATAATGAAATCCTTGTGACTATTGAGGCCTTGTTTCTTCTGCAAAACTCCAATCTCTAGTTCGTTTTTTTTGTTACCTTCTGTGTGTTCATTTCATGTGGCATTCACACCTTAACAGACTGAAATATATGATCTGCCTCCTCTCCTTTGTCACTTACCATTACATTCAATTGAGAGAGCAGTGATGAGCACTCCCACAAGAGGCACTTCTAATACGCTTCTCTCTCTGCCATTGCCCTCTCCTACTCCTAAGGCGCCTTCCGGGTACCCAGATTTGTATCGAAAGCGCCGCGAAACGGCCAAGATTCAGATGCTGGAAAGAGAGATAAGCTTCCTTGAGGAAGAGTTAAAGTCTTCTGAAGGCCTTCAACCTGCTTCAAGATGCTGCAAAGAGATTGCCGATTTTGTGATGGCAAACTCAGATCCTCTGTTACCTACTGACATCCCTTGCTTTAACTTGTCTTGGATCTGCCATTGGTGCTGTGATGGGTGCTTTGAACATCAAAACTTGTCAAGTTGCTGTTCCCACGGCAAACCATGCAACTGCTGTTCTAGTTGTCTTCCATCTACCAATTGCTCTTGCTGCTCTAATGGAAGATCACATTGCTGCAAAGATAGCTGTGGTTGCAAAAATTGTTGCACTCTCCCAAGTTGCAATTTTGGGTGGCCTTTTCCCTCTTGCTGCATCTGCAAATGCTCTTGCTCTTGCTCTTGCCCAAAATGTCCCAAGGTTCGTCCATGTTGTTGTTGTACAAATTGCTGTTGGAACCCTTGTTCATGTTTCTAGTATAGTGTTACAAAAAAATTTCGAAAGCTATTATTTTCTATAAAAATTGTATTTATAGTAGCAATTTCCTAAAATTGACAATATAGAGGCTTAAAATTATAGATGTTCTGCTAATCTTTCATCATGTGGATACTACTTACTAGAAGCAAATGCAATATTTCCC
Coding sequences of Glyma15g19631
>Glyma15g19631.1   sequence type=CDS   gene model=Glyma15g19631   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCACTCCCACAAGAGGCACTTCTAATACGCTTCTCTCTCTGCCATTGCCCTCTCCTACTCCTAAGGCGCCTTCCGGGTACCCAGATTTGTATCGAAAGCGCCGCGAAACGGCCAAGATTCAGATGCTGGAAAGAGAGATAAGCTTCCTTGAGGAAGAGTTAAAGTCTTCTGAAGGCCTTCAACCTGCTTCAAGATGCTGCAAAGAGATTGCCGATTTTGTGATGGCAAACTCAGATCCTCTGTTACCTACGAGCAAGAAGAACCACCAGTCATGTAGCTTGTGGAAGTGGTTGTGTGACATCCCTTGCTTTAACTTGTCTTGGATCTGCCATTGGTGCTGTGATGGGTGCTTTGAACATCAAAACTTGTCAAGTTGCTGTTCCCACGGCAAACCATGCAACTGCTGTTCTAGTTGTCTTCCATCTACCAATTGCTCTTGCTGCTCTAATGGAAGATCACATTGCTGCAAAGATAGCTGTGGTTGCAAAAATTGTTGCACTCTCCCAAGTTGCAATTTTGGGTGGCCTTTTCCCTCTTGCTGCATCTGCAAATGCTCTTGCTCTTGCTCTTGCCCAAAATGTCCCAAGGTTCGTCCATGTTGTTGTTGTACAAATTGCTGTTGGAACCCTTGTTCATGTTTCTAG

>Glyma15g19631.2   sequence type=CDS   gene model=Glyma15g19631   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCACTCCCACAAGAGGCACTTCTAATACGCTTCTCTCTCTGCCATTGCCCTCTCCTACTCCTAAGGCGCCTTCCGGGTACCCAGATTTGTATCGAAAGCGCCGCGAAACGGCCAAGATTCAGATGCTGGAAAGAGAGATAAGCTTCCTTGAGGAAGAGTTAAAGTCTTCTGAAGGCCTTCAACCTGCTTCAAGATGCTGCAAAGAGATTGCCGATTTTGTGATGGCAAACTCAGATCCTCTGTTACCTACTGACATCCCTTGCTTTAACTTGTCTTGGATCTGCCATTGGTGCTGTGATGGGTGCTTTGAACATCAAAACTTGTCAAGTTGCTGTTCCCACGGCAAACCATGCAACTGCTGTTCTAGTTGTCTTCCATCTACCAATTGCTCTTGCTGCTCTAATGGAAGATCACATTGCTGCAAAGATAGCTGTGGTTGCAAAAATTGTTGCACTCTCCCAAGTTGCAATTTTGGGTGGCCTTTTCCCTCTTGCTGCATCTGCAAATGCTCTTGCTCTTGCTCTTGCCCAAAATGTCCCAAGGTTCGTCCATGTTGTTGTTGTACAAATTGCTGTTGGAACCCTTGTTCATGTTTCTAG
Predicted protein sequences of Glyma15g19631
>Glyma15g19631.1   sequence type=predicted peptide   gene model=Glyma15g19631   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTPTRGTSNTLLSLPLPSPTPKAPSGYPDLYRKRRETAKIQMLEREISFLEEELKSSEGLQPASRCCKEIADFVMANSDPLLPTSKKNHQSCSLWKWLCDIPCFNLSWICHWCCDGCFEHQNLSSCCSHGKPCNCCSSCLPSTNCSCCSNGRSHCCKDSCGCKNCCTLPSCNFGWPFPSCCICKCSCSCSCPKCPKVRPCCCCTNCCWNPCSCF*

>Glyma15g19631.2   sequence type=predicted peptide   gene model=Glyma15g19631   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTPTRGTSNTLLSLPLPSPTPKAPSGYPDLYRKRRETAKIQMLEREISFLEEELKSSEGLQPASRCCKEIADFVMANSDPLLPTDIPCFNLSWICHWCCDGCFEHQNLSSCCSHGKPCNCCSSCLPSTNCSCCSNGRSHCCKDSCGCKNCCTLPSCNFGWPFPSCCICKCSCSCSCPKCPKVRPCCCCTNCCWNPCSCF*






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