Glyma15g19570 - SoyBase

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Report for Sequence Feature Glyma15g19570

Feature Type:	gene_model
Chromosome:	Gm15
Start:	16919691
stop:	16924973
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g19570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G06005	AT	Annotation by Michelle Graham. TAIR10: FRIGIDA interacting protein 1 \| chr2:2332583-2336022 FORWARD LENGTH=355	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
UniRef100_I1MHF9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHF9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8S8K9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Arabidopsis thaliana RepID=Q8S8K9_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g19570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g19570

Paralog	Evidence	Comments
Glyma09g08090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g19570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g177700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g19570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g19570

Limit To All Plant Sequences

>Glyma15g19570.2   sequence type=transcript   gene model=Glyma15g19570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATTAATTTATTTATTTTTTGAAAAAAATTAGTAGTAGACTATTAGGTAAACCAGACAGCGTTACAATTTTGGCGAGCATGGGGATAGAAGAACCTCCGTGACTGAACCCTGCAAATCCAATCCAACCCTCTCTTCTGCGATGGCCACCGACAGATACGCTTCTCCGCCAGCCACATCGCCTGAGGAGAACGCTCTCTTTCTCGATATACTGCACGAGGCTCCTCTCTTCGCTCACCGCCAGGCTGCAAGGGTTATTGGAAGTGTTCTCTATTGCATTTTATTGGCAAGTTATGCTACTTTGGCCATTGGAGCTCACTGGATATTTCGTCCCGTTCGAGGACTCATCTCTCCCGTGCTTTGTAGTTGTGATGTTCTTCTTTTGCTGTTAACAGGAATCTTTCAACAATACCTGGTTTATCAAGTGCAGAAGATACGCTTGCAGGGCTATTATAGTTTCAGCCAGAAGTTGAAATTTATTGTCCGCATACCCTTTGCTATTACAGCTTATGGAACTGCTGCAATGCTACTTGTTATAGTCTGGAAACCTTACACTGGTTTTCTGTCAATCTCTGCAATATTGAGGATCATTATGGTAGTTGAAGCAGTATGTGCCGGCTGTTTTATGAGTCTTTTCATTGGTTACATACACCAGTACAATTCATTAAACTCACATCCTGATGTTCTGAAGTCCTTATACTCACCACTACAACCATCAAGTTCTCTGGAGGGTCTAAGGTACCATGATGGTAGGCTCTCTGATCAGCAAATGGCTTTGCTGCAATATCAGCGTGAAAATCTTCATTTTTTGAGTGAGGAGATTCTCCGATTGCAAGAGTGTCTAAGCAAATATGAACGAACTGATGATCGGAGCACACCACAGGTTGACCTTGCCCATCTACTAGCAGCTCGTGATCAAGAGTTACGGACACTGTCTGCAGAGATGAACCAAGTGCAATCTGAGTTGAGGCTTGCCCGGTCTTTGATTGCTGAAAGGGACTCAGAGATCCAACATGTTCGCATGACCAACAATCAGTATGTAGAAGAGAATGAAAGACTAAGAGCTATCTTAGGGGAATGGAGTACCCGGGCTGCCAAGCTTGAGCGAGCACTGGAGGCTGAGCGGATGTCAACTCTTGAATTACAAAGGAAACTTTCAACGCCAAGAAGTCAACCATATACATCAACAGAAGCAAACCAACATGGAGCTTAATTCACTTGCAGGAAAATATGGTACATGCCCAGTTCGTGTTGAGCATTTAACCTTGTTCTCACATGTTAAAAGAACATGTAACCGTCATTATTGTAGAGAGATCCAATGTACATATATTAGCTTCAAATAGGGTTTTATTTTTTTGTTCAAGAGAAATGCAAAATGATTTAATTTAATTGAGTTATTGTGTGCCATTGTCCTCCATTTTTGCATCTGC

>Glyma15g19570.3   sequence type=transcript   gene model=Glyma15g19570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCACATTATCTGTAAATACAAATCAAACTGTGGGTTCTTGGATTATCTTGATGCAATAGGTACCATGATGGTAGGCTCTCTGATCAGCAAATGGCTTTGCTGCAATATCAGCGTGAAAATCTTCATTTTTTGAGTGAGGAGATTCTCCGATTGCAAGAGTGTCTAAGCAAATATGAACGAACTGATGATCGGAGCACACCACAGGTTGACCTTGCCCATCTACTAGCAGCTCGTGATCAAGAGTTACGGACACTGTCTGCAGAGATGAACCAAGTGCAATCTGAGTTGAGGCTTGCCCGGTCTTTGATTGCTGAAAGGGACTCAGAGATCCAACATGTTCGCATGACCAACAATCAGTATGTAGAAGAGAATGAAAGACTAAGAGCTATCTTAGGGGAATGGAGTACCCGGGCTGCCAAGCTTGAGCGAGCACTGGAGGCTGAGCGGATGTCAACTCTTGAATTACAAAGGAAACTTTCAACGCCAAGAAGTCAACCATATACATCAACAGAAGCAAACCAACATGGAGCTTAATTCACTTGCAGGAAAATATGGTACATGCCCAGTTCGTGTTGAGCATTTAACCTTGTTCTCACATGTTAAAAGAACATGTAACCGTCATTATTGTAGAGAGATCCAATGTACATATATTAGCTTCAAATAGGGTTTTATTTTTTTGTTCAAGAGAAATGCAAAATGATTTAATTTAATTGAGTTATTGTGTGCCATTGTCCTCC

Coding sequences of Glyma15g19570

Limit To All Plant Sequences

>Glyma15g19570.1   sequence type=CDS   gene model=Glyma15g19570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCGACAGATACGCTTCTCCGCCAGCCACATCGCCTGAGGAGAACGCTCTCTTTCTCGATATACTGCACGAGGCTCCTCTCTTCGCTCACCGCCAGGCTGCAAGGGTTATTGGAAGTGTTCTCTATTGCATTTTATTGGCAGGTTATGCTACTTTGGCCATTGGAGCTCACTGGATATTTCGTCCCGTTCGAGGACTCATCTCTCCCGTGCTTTGTAGTTGTGATGTTCTTCTTTTGCTGTTAACAGGAATCTTTCAACAATACCTGGTTTATCAAGTGCAGAAGATACGCTTGCAGGGCTATTATAGTTTCAGCCAGAAGTTGAAATTTATTGTCCGCATACCCTTTGCTATTACAGCTTATGGAACTGCTGCAATGCTACTTGTTATAGTCTGGAAACCTTACACTGGTTTTCTGTCAATCTCTGCAATATTGAGGATCATTATGGTAGTTGAAGCAGTATGTGCCGGCTGTTTTATGAGTCTTTTCATTGGTTACATACACCAGTACAATTCATTAAACTCACATCCTGATGTTCTGAAGTCCTTATACTCACCACTACAACCATCAAGTTCTCTGGAGGGTCTAAGGTACCATGATGGTAGGCTCTCTGATCAGCAAATGGCTTTGCTGCAATATCAGCGTGAAAATCTTCATTTTTTGAGTGAGGAGATTCTCCGATTGCAAGAGTGTCTAAGCAAATATGAACGAACTGATGATCGGAGCACACCACAGGTTGACCTTGCCCATCTACTAGCAGCTCGTGATCAAGAGTTACGGACACTGTCTGCAGAGATGAACCAAGTGCAATCTGAGTTGAGGCTTGCCCGGTCTTTGATTGCTGAAAGGGACTCAGAGATCCAACATGTTCGCATGACCAACAATCAGTATGTAGAAGAGAATGAAAGACTAAGAGCTATCTTAGGGGAATGGAGTACCCGGGCTGCCAAGCTTGAGCGAGCACTGGAGGCTGAGCGGATGTCAACTCTTGAATTACAAAGGAAACTTTCAACGCCAAGAAGTCAACCATATACATCAACAGAAGCAAACCAACATGGAGCTTAA

>Glyma15g19570.2   sequence type=CDS   gene model=Glyma15g19570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCGACAGATACGCTTCTCCGCCAGCCACATCGCCTGAGGAGAACGCTCTCTTTCTCGATATACTGCACGAGGCTCCTCTCTTCGCTCACCGCCAGGCTGCAAGGGTTATTGGAAGTGTTCTCTATTGCATTTTATTGGCAAGTTATGCTACTTTGGCCATTGGAGCTCACTGGATATTTCGTCCCGTTCGAGGACTCATCTCTCCCGTGCTTTGTAGTTGTGATGTTCTTCTTTTGCTGTTAACAGGAATCTTTCAACAATACCTGGTTTATCAAGTGCAGAAGATACGCTTGCAGGGCTATTATAGTTTCAGCCAGAAGTTGAAATTTATTGTCCGCATACCCTTTGCTATTACAGCTTATGGAACTGCTGCAATGCTACTTGTTATAGTCTGGAAACCTTACACTGGTTTTCTGTCAATCTCTGCAATATTGAGGATCATTATGGTAGTTGAAGCAGTATGTGCCGGCTGTTTTATGAGTCTTTTCATTGGTTACATACACCAGTACAATTCATTAAACTCACATCCTGATGTTCTGAAGTCCTTATACTCACCACTACAACCATCAAGTTCTCTGGAGGGTCTAAGGTACCATGATGGTAGGCTCTCTGATCAGCAAATGGCTTTGCTGCAATATCAGCGTGAAAATCTTCATTTTTTGAGTGAGGAGATTCTCCGATTGCAAGAGTGTCTAAGCAAATATGAACGAACTGATGATCGGAGCACACCACAGGTTGACCTTGCCCATCTACTAGCAGCTCGTGATCAAGAGTTACGGACACTGTCTGCAGAGATGAACCAAGTGCAATCTGAGTTGAGGCTTGCCCGGTCTTTGATTGCTGAAAGGGACTCAGAGATCCAACATGTTCGCATGACCAACAATCAGTATGTAGAAGAGAATGAAAGACTAAGAGCTATCTTAGGGGAATGGAGTACCCGGGCTGCCAAGCTTGAGCGAGCACTGGAGGCTGAGCGGATGTCAACTCTTGAATTACAAAGGAAACTTTCAACGCCAAGAAGTCAACCATATACATCAACAGAAGCAAACCAACATGGAGCTTAA

>Glyma15g19570.3   sequence type=CDS   gene model=Glyma15g19570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTGCTGCAATATCAGCGTGAAAATCTTCATTTTTTGAGTGAGGAGATTCTCCGATTGCAAGAGTGTCTAAGCAAATATGAACGAACTGATGATCGGAGCACACCACAGGTTGACCTTGCCCATCTACTAGCAGCTCGTGATCAAGAGTTACGGACACTGTCTGCAGAGATGAACCAAGTGCAATCTGAGTTGAGGCTTGCCCGGTCTTTGATTGCTGAAAGGGACTCAGAGATCCAACATGTTCGCATGACCAACAATCAGTATGTAGAAGAGAATGAAAGACTAAGAGCTATCTTAGGGGAATGGAGTACCCGGGCTGCCAAGCTTGAGCGAGCACTGGAGGCTGAGCGGATGTCAACTCTTGAATTACAAAGGAAACTTTCAACGCCAAGAAGTCAACCATATACATCAACAGAAGCAAACCAACATGGAGCTTAA

Predicted protein sequences of Glyma15g19570

Limit To All Plant Sequences

>Glyma15g19570.1   sequence type=predicted peptide   gene model=Glyma15g19570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATDRYASPPATSPEENALFLDILHEAPLFAHRQAARVIGSVLYCILLAGYATLAIGAHWIFRPVRGLISPVLCSCDVLLLLLTGIFQQYLVYQVQKIRLQGYYSFSQKLKFIVRIPFAITAYGTAAMLLVIVWKPYTGFLSISAILRIIMVVEAVCAGCFMSLFIGYIHQYNSLNSHPDVLKSLYSPLQPSSSLEGLRYHDGRLSDQQMALLQYQRENLHFLSEEILRLQECLSKYERTDDRSTPQVDLAHLLAARDQELRTLSAEMNQVQSELRLARSLIAERDSEIQHVRMTNNQYVEENERLRAILGEWSTRAAKLERALEAERMSTLELQRKLSTPRSQPYTSTEANQHGA*

>Glyma15g19570.2   sequence type=predicted peptide   gene model=Glyma15g19570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATDRYASPPATSPEENALFLDILHEAPLFAHRQAARVIGSVLYCILLASYATLAIGAHWIFRPVRGLISPVLCSCDVLLLLLTGIFQQYLVYQVQKIRLQGYYSFSQKLKFIVRIPFAITAYGTAAMLLVIVWKPYTGFLSISAILRIIMVVEAVCAGCFMSLFIGYIHQYNSLNSHPDVLKSLYSPLQPSSSLEGLRYHDGRLSDQQMALLQYQRENLHFLSEEILRLQECLSKYERTDDRSTPQVDLAHLLAARDQELRTLSAEMNQVQSELRLARSLIAERDSEIQHVRMTNNQYVEENERLRAILGEWSTRAAKLERALEAERMSTLELQRKLSTPRSQPYTSTEANQHGA*

>Glyma15g19570.3   sequence type=predicted peptide   gene model=Glyma15g19570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALLQYQRENLHFLSEEILRLQECLSKYERTDDRSTPQVDLAHLLAARDQELRTLSAEMNQVQSELRLARSLIAERDSEIQHVRMTNNQYVEENERLRAILGEWSTRAAKLERALEAERMSTLELQRKLSTPRSQPYTSTEANQHGA*

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