Glyma15g19560 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g19560

Feature Type:	gene_model
Chromosome:	Gm15
Start:	16912631
stop:	16918588
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g19560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77550	AT	Annotation by Michelle Graham. TAIR10: tubulin-tyrosine ligases;tubulin-tyrosine ligases \| chr1:29138490-29142965 REVERSE LENGTH=855	SoyBase	E_val: 0	ISS
GO:0006464	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular protein modification process	SoyBase	N/A	ISS
GO:0042991	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription factor import into nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004835	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tubulin-tyrosine ligase activity	SoyBase	N/A	ISS
KOG2155	KOG	Tubulin-tyrosine ligase-related protein	JGI		ISS
PTHR12241	Panther	TUBULIN TYROSINE LIGASE-RELATED	JGI		ISS
PTHR12241:SF13	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF03133	PFAM	Tubulin-tyrosine ligase family	JGI		ISS
UniRef100_B9RRA6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RRA6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MHF8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHF8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g19560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g19560

Paralog	Evidence	Comments
Glyma09g08080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g19560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g177600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g19560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g19560

Limit To All Plant Sequences

>Glyma15g19560.1   sequence type=CDS   gene model=Glyma15g19560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCCCATGGCCGGCACCACCGCCACCGGCAGTAGAAAAATCGAAACATACGAAGAGTTTGAGAAAGTTCACGCGCTGCTCCTCGCGGCGTCGGGGCTACCGGAGCGGCTACACCGGCGCCTCTTCGAGAAGCTCTCCTGCGAGCACTTTGACGGAGGCGATCACTTCCAGATCGAGCCGTGCGAGGAGGGCCGCCAGAGGCGCCTCGTCCTCACGTCGGCGTCCATGCCGCGGGACTCCGACGTCTTCCTCGTCGACCACGCGTGGACCTTCAGACTCTCCGACGCCTACACGCAGCTAAGTAAGGTTCCGGGGTTGGCTGAGAGGATGGGGTCTTTGATGTGTGTGGATGTTGATGTCGATGTGAGTTTGGATGCTGAAGATGAAGCTGAAGTGAATGATGAACGTGATGTTGTGGAAACTTTGGAGAGTGAAGTTCGAGAGGCGAAGGAGAATGGAGATGGCACGTTGAGGTGGTTGGAGCTTGAGGGGCTTCACATTGATGATGATATGCTTGTGTCTCTCGCCTTATCAACTAGGTTTCCGGAGTTAGTGGCACTTAGCCTTCTTGGAAACAAGCTCAATAGTGCTGAAGTGGTTTTTCAAGAACTTATCAAACTTAAGCATCTTAAAGGAATCTGGCTCAACAATAACCCTGTTCTTAAAAATTGTGATGGTGAGCTTGAACAGGTGATTCTTAAGGAGTTGCCAGAACTGGAAATTTATAATTCAAGTTTAACGGGCAATTTTGGGGAGTGGGCCTTGGGCTTTTGTGCAGGGTTATATGGAAAGGATAATCCTGGAAATGCTGATCAGACTGATACTCTGCTGCACACTGTGTCTACTCTGGACCTTTCAAATAGAAACATTCACAATTTAATCAAGAAGGCATTTTCACCCATTTGTTTGCCATCTCTTTCTTACTTGAATATTCGAGGAAATCCATTGGAGCAAAACTCAGTTGGTGACTTGTTAGATCTGCTGAGGAGATTCCCTTGCTTGCGTTCATTGGAGGTGGATATTCCTGGTCCGCTTGGAGGAAGTGCCATTGAAATTCTGGAATCTCTTCCAAACATTTCTGAGCTAAATGGTATCAGTGCATCCAAAATATTGGAAACTGGAAAGCATATTATTGATTCAATGCTTCTTCCTCGTCTTCCTGAATGGACTCCTGATGAGCCTCTTGCTGATCGTATTATAAATGCGATGTGGCAATATCTAATGACATATAGACTTGCAGATGAAGAAAAGTTAGATGAAACATCTGTATGGTATGTGATGGATGAGCTAGGTTCAGCTTTGCGGCATAGTGATGAGCCAAATTTCAGAGTGGCACCATTTCTGTTCATGCCAGAGGGCAATCTAGCATCAGCTGTGAGCTTTTCTATTCTATGGCCAACACAGAATGTTTGTAAAGGTGATGAGTGCACACGTGATTTTCTTCTTGGTATTGGGGAGGATAAACAACGTTCTGCCAGGCTTACAGCCTGGTTCCACACTCCAGAGAACTATTTTATCCATGCATATGAAAAGCACCATCAGAAATTGTTGTCCACAAGTTTAATGCTGCCCACCTTTCAGTCTTCTGAAACTAGAAGCATTCATCAACCTGGTGGGCGTCCATTACGTGTTTACACAGATATACCTCATGTAGAGGAATACTTGACTCATCCGAAGTTTGCAATCACAAAGGAACCAAAAGATGCAGATATAATATGGACAAGTGTGCAGGTAGATGAGGATATGAAGAAGGCCACAGGAATTACAGATCAACAATACATCAATCAATTTCCTTTTGAGGCATGTCTTGTTATGAAGCATCATTTAGCAGAGACAATTCAGAAGGCACATGGATCTCCTCAATGGTTGCAGCCTACTTATAATCTTGAAACACACCTATCTCAGCTTATTGGTGACTATTGTGTACGCAAAAAGGAAGGACTAGACAATCTCTGGATCTTAAAACCCTGGAACATGGCCCGAACTATTGATACTACTGTAACCGATAATTTGCCTGCAATAATCCGGCTCATGGAAACTGGTCCCAAGATTTGCCAGAAGTATATTGAACAACCTGCTTTGTTCCAGGGGAGAAAGTTTGATCTCCGTTACATATTACTGGTTCGGAGCATGCACCCTCTGGAGATATTCCTGTCAGATTGTTTCTGGGTTAGGATTGCCAACAACCAATATTCTTTGGACAGAAGTAGTTTGTTTGAATACGAAACTCACTTCACTGTTATGAACTATCGTGGAGCAATAAATCATAAGAATGCTAGCGATTTTGTGAGGGAATTTGAGGAAGAACATCAAGTTAAATGGTTGGATATACACACAAGAGTAAGGAAAATAATTCGATCAGTGTTTGAGGCAGCTGCTGTTACTCATCCTGAGATGCATAGTCCAACATCACGGGCAATGTACGGTGTAGATGTCATGTTGGACAGCTCTTTTCAACCCAAGTTACTAGAGGTGACTTACTGCCCGGATTGTACAAGAGCTTGCAAATATGACATGGATATTGTGGTTGGCGAGGGAGGCGTTGCCAAAGCTAGTGATTTCTTCAACAATGTGTTTAGGTGTCTCTTTTTGAACGAAATTTCACAGGTTAGCCCATTGTAA

Predicted protein sequences of Glyma15g19560

Limit To All Plant Sequences

>Glyma15g19560.1   sequence type=predicted peptide   gene model=Glyma15g19560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPMAGTTATGSRKIETYEEFEKVHALLLAASGLPERLHRRLFEKLSCEHFDGGDHFQIEPCEEGRQRRLVLTSASMPRDSDVFLVDHAWTFRLSDAYTQLSKVPGLAERMGSLMCVDVDVDVSLDAEDEAEVNDERDVVETLESEVREAKENGDGTLRWLELEGLHIDDDMLVSLALSTRFPELVALSLLGNKLNSAEVVFQELIKLKHLKGIWLNNNPVLKNCDGELEQVILKELPELEIYNSSLTGNFGEWALGFCAGLYGKDNPGNADQTDTLLHTVSTLDLSNRNIHNLIKKAFSPICLPSLSYLNIRGNPLEQNSVGDLLDLLRRFPCLRSLEVDIPGPLGGSAIEILESLPNISELNGISASKILETGKHIIDSMLLPRLPEWTPDEPLADRIINAMWQYLMTYRLADEEKLDETSVWYVMDELGSALRHSDEPNFRVAPFLFMPEGNLASAVSFSILWPTQNVCKGDECTRDFLLGIGEDKQRSARLTAWFHTPENYFIHAYEKHHQKLLSTSLMLPTFQSSETRSIHQPGGRPLRVYTDIPHVEEYLTHPKFAITKEPKDADIIWTSVQVDEDMKKATGITDQQYINQFPFEACLVMKHHLAETIQKAHGSPQWLQPTYNLETHLSQLIGDYCVRKKEGLDNLWILKPWNMARTIDTTVTDNLPAIIRLMETGPKICQKYIEQPALFQGRKFDLRYILLVRSMHPLEIFLSDCFWVRIANNQYSLDRSSLFEYETHFTVMNYRGAINHKNASDFVREFEEEHQVKWLDIHTRVRKIIRSVFEAAAVTHPEMHSPTSRAMYGVDVMLDSSFQPKLLEVTYCPDCTRACKYDMDIVVGEGGVAKASDFFNNVFRCLFLNEISQVSPL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain