Glyma15g19550 - SoyBase

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Report for Sequence Feature Glyma15g19550

Feature Type:	gene_model
Chromosome:	Gm15
Start:	16894950
stop:	16905730
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g19550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G06025	AT	Annotation by Michelle Graham. TAIR10: Acyl-CoA N-acyltransferases (NAT) superfamily protein \| chr2:2350231-2351898 FORWARD LENGTH=288	SoyBase	E_val: 3.00E-117	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0008080	GO-mf	Annotation by Michelle Graham. GO Molecular Function: N-acetyltransferase activity	SoyBase	N/A	ISS
PTHR23091	Panther	N-TERMINAL ACETYLTRANSFERASE	JGI		ISS
PTHR23091:SF22	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00583	PFAM	Acetyltransferase (GNAT) family	JGI		ISS
UniRef100_I1MHF7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHF7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8GUT5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acyl-CoA N-acyltransferases-like protein n=1 Tax=Arabidopsis thaliana RepID=Q8GUT5_ARATH	SoyBase	E_val: 1.00E-114	ISS

Expression Patterns of Glyma15g19550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g19550

Paralog	Evidence	Comments
Glyma09g08070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g19550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g177500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g19550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g19550

Limit To All Plant Sequences

>Glyma15g19550.2   sequence type=transcript   gene model=Glyma15g19550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCAAGATATAATCATAAAGTGAAACAAAAAATACAACGGATAGGCATATGACATATCCATTGTCGTGACTACTCAAGTCGTAGCATACCCCACCACACCGATACCATCAATCCAGAACTCAAGTTCCTGGCGTACAAGCACCATGAAATGAAGTGTCCTCACTATTAACACCAATTCTCAATCTTGTGAAATTCACAAGAACAACAAATAAAAACAAAATAGAGGGTAATTTTCCACCTTCAATACAAACCATACCATAAGGGCCCCTTTCAACGCATGCTTTCTCTCCCAAATTCTTCCTCTTTCTCCCTCTTTCACTTCAATTTTCTTATGTTGCATCAGTGCCAAAAGGGGTTTGTTCCTGCACAAGTAAATTCATCCCTTAGGCTAAAAAAAAAATAAGGTATTTCATTTTCATTTTTTTGGGGGTTTCAATAAGCCATTGAATCTAGAAGAAAAACATGCCTCCCATGTCAACGATTCCAATTCACAGACCTGAATTTCGTACCTTATTCTTCAATGGGTCTCCAAGCCCTTGCAAATGCCTCAGAATTACTGCCTCATGGACCATGACCATGGATTCGAAATTTTCTCCAACAACAAAGAATAGTAATGATAATAATTATAATCTGAAGAAGAAGGAAGAACTCTCTGTGCAGATTCCAACCCCACCCATTTCCAAAGTGGAAACTTTAAACTCCAATGATCTCCAATTTGATCGATTGCAGCCATCGGATCAAGAATTGGGTCGAGTAAAAAGGTTTGAGTTTGGGCAATTTGTCGCACGAGAAGCTGTGCTTGATGAAGAGTATTGGACAGCAGCATGGTTAAGGGCAGAAAGTCACTGGGAGGATCGACCGTACGACAGATATGTTGATAACTACAAAAGGAAATTTGCCGAGCAGGAATTTAATGCATTAAAAAGACGGTGCAAGGTGCAAAATGGTGATAGTTGCGCATGCATCATCACGGTGAGGAAGGAGCAGAAAAATGCAAAGCACTCAGTATTAAAGAGTGTTGTAGGAACCCTTGATTTGAATATCCGATATTTGCTACAAGGGGAGACTTATCCCGGGGAACGTGTAAAGGCCCCTCTTTTTTGCAGCATCAACAGAACACCACCAAGCAGGTATGGCTACATTGCAAACTTATGCGTCATCAAATCAGTTAGGCGACAGGGAATTGCAAGCAACATGATGTCTTTTGCTATTGAAGCTGCAAAATCTAATGCAGGTTTGACACAGGTGTATGTGCATGTGGACAGAAATAATAGGCCTGCACAGATATTATACCAAAAAATGGGCTTCGAGATGGTTGAAATGGCAAACTCCCAGTTGGTAGAAGAAACATACTTACTGCGTTTACAGGCATAAAATAACAAAGATTACTCACGCTAGGTATAAGCTTTTAGTTTATGTAAATGCATTTAGGTGACCAGGCTTGTACCTAAGGTATCAAGTTTCCATTATTTCTACCTTTTCATTTTCAAAGCATGGGTATTTAATTCTGCAGTTTTTATAGGTGTCATGTATTCTTCCTAACGGAAAAAAATGTGTCATTTGAAAAACAAACTCAGATGTATTGGATTTGAAGAAAGTCAATTTATTTTTTATTGCAACATTTTCGTCTTCTTTTTGTCCAAGATTTAATTTCGCAGTCAGATCATATTACTCGATTACAAGCTATAAAGAGCTGTGTCAAGCTTGTATCATAACTTTAAG

Coding sequences of Glyma15g19550

Limit To All Plant Sequences

>Glyma15g19550.1   sequence type=CDS   gene model=Glyma15g19550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCCCATGTCAACGATTCCAATTCACAGACCTGAATTTCGTACCTTATTCTTCAATGGGTCTCCAAGCCCTTGCAAATGCCTCAGAATTACTGCCTCATGGACCATGACCATGGATTCGAAATTTTCTCCAACAACAAAGAATAGTAATGATAATAATTATAATCTGAAGAAGAAGGAAGAACTCTCTGTGCAGATTCCAACCCCACCCATTTCCAAAGTGGAAACTTTAAACTCCAATGATCTCCAATTTGATCGATTGCAGCCATCGGATCAAGAATTGGGTCGAGTAAAAAGGTTTGAGTTTGGGCAATTTGTCGCACGAGAAGCTGTGCTTGATGAAGAGTATTGGACAGCAGCATGGTTAAGGGCAGAAAGTCACTGGGAGGATCGACCGTACGACAGATATGTTGATAACTACAAAAGGAAATTTGCCGAGCAGGAATTTAATGCATTAAAAAGACGGTGCAAGGTGCAAAATGGTGATAGTTGCGCATGCATCATCACGGTGAGGAAGGAGCAGAAAAATGCAAAGCACTCAGTATTAAAGAGTGTTGTAGGAACCCTTGATTTGAATATCCGATATTTGCTACAAGGGGAGACTTATCCCGGGGAACGTGTAAAGGCCCCTCTTTTTTGCAGCATCAACAGAACACCACCAAGCAGGTATGGCTACATTGCAAACTTATGCGTCATCAAATCAGTTAGGCGACAGGGAATTGCAAGCAACATGATGTCTTTTGCTATTGAAGCTGCAAAATCTAATGGTTTGACACAGGTGTATGTGCATGTGGACAGAAATAATAGGCCTGCACAGATATTATACCAAAAAATGGGCTTCGAGATGGTTGAAATGGCAAACTCCCAGTTGGTAGAAGAAACATACTTACTGCGTTTACAGGCATAA

>Glyma15g19550.2   sequence type=CDS   gene model=Glyma15g19550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCCCATGTCAACGATTCCAATTCACAGACCTGAATTTCGTACCTTATTCTTCAATGGGTCTCCAAGCCCTTGCAAATGCCTCAGAATTACTGCCTCATGGACCATGACCATGGATTCGAAATTTTCTCCAACAACAAAGAATAGTAATGATAATAATTATAATCTGAAGAAGAAGGAAGAACTCTCTGTGCAGATTCCAACCCCACCCATTTCCAAAGTGGAAACTTTAAACTCCAATGATCTCCAATTTGATCGATTGCAGCCATCGGATCAAGAATTGGGTCGAGTAAAAAGGTTTGAGTTTGGGCAATTTGTCGCACGAGAAGCTGTGCTTGATGAAGAGTATTGGACAGCAGCATGGTTAAGGGCAGAAAGTCACTGGGAGGATCGACCGTACGACAGATATGTTGATAACTACAAAAGGAAATTTGCCGAGCAGGAATTTAATGCATTAAAAAGACGGTGCAAGGTGCAAAATGGTGATAGTTGCGCATGCATCATCACGGTGAGGAAGGAGCAGAAAAATGCAAAGCACTCAGTATTAAAGAGTGTTGTAGGAACCCTTGATTTGAATATCCGATATTTGCTACAAGGGGAGACTTATCCCGGGGAACGTGTAAAGGCCCCTCTTTTTTGCAGCATCAACAGAACACCACCAAGCAGGTATGGCTACATTGCAAACTTATGCGTCATCAAATCAGTTAGGCGACAGGGAATTGCAAGCAACATGATGTCTTTTGCTATTGAAGCTGCAAAATCTAATGCAGGTTTGACACAGGTGTATGTGCATGTGGACAGAAATAATAGGCCTGCACAGATATTATACCAAAAAATGGGCTTCGAGATGGTTGAAATGGCAAACTCCCAGTTGGTAGAAGAAACATACTTACTGCGTTTACAGGCATAA

Predicted protein sequences of Glyma15g19550

Limit To All Plant Sequences

>Glyma15g19550.1   sequence type=predicted peptide   gene model=Glyma15g19550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPPMSTIPIHRPEFRTLFFNGSPSPCKCLRITASWTMTMDSKFSPTTKNSNDNNYNLKKKEELSVQIPTPPISKVETLNSNDLQFDRLQPSDQELGRVKRFEFGQFVAREAVLDEEYWTAAWLRAESHWEDRPYDRYVDNYKRKFAEQEFNALKRRCKVQNGDSCACIITVRKEQKNAKHSVLKSVVGTLDLNIRYLLQGETYPGERVKAPLFCSINRTPPSRYGYIANLCVIKSVRRQGIASNMMSFAIEAAKSNGLTQVYVHVDRNNRPAQILYQKMGFEMVEMANSQLVEETYLLRLQA*

>Glyma15g19550.2   sequence type=predicted peptide   gene model=Glyma15g19550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPPMSTIPIHRPEFRTLFFNGSPSPCKCLRITASWTMTMDSKFSPTTKNSNDNNYNLKKKEELSVQIPTPPISKVETLNSNDLQFDRLQPSDQELGRVKRFEFGQFVAREAVLDEEYWTAAWLRAESHWEDRPYDRYVDNYKRKFAEQEFNALKRRCKVQNGDSCACIITVRKEQKNAKHSVLKSVVGTLDLNIRYLLQGETYPGERVKAPLFCSINRTPPSRYGYIANLCVIKSVRRQGIASNMMSFAIEAAKSNAGLTQVYVHVDRNNRPAQILYQKMGFEMVEMANSQLVEETYLLRLQA*

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