Glyma15g19530 - SoyBase

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Report for Sequence Feature Glyma15g19530

Feature Type:	gene_model
Chromosome:	Gm15
Start:	16856174
stop:	16861253
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g19530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G35570	AT	Annotation by Michelle Graham. TAIR10: O-fucosyltransferase family protein \| chr5:13750101-13753383 REVERSE LENGTH=652	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PF10250	PFAM	GDP-fucose protein O-fucosyltransferase	JGI		ISS
UniRef100_Q94BY4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g35570/K2K18_1 n=1 Tax=Arabidopsis thaliana RepID=Q94BY4_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI000233AEA6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AEA6 related cluster n=1 Tax=unknown RepID=UPI000233AEA6	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g19530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g19530

Paralog	Evidence	Comments
Glyma09g08051	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g19530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g177100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g19530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g19530

Limit To All Plant Sequences

>Glyma15g19530.1   sequence type=CDS   gene model=Glyma15g19530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACACTAACTAACATGGCGCACAATAACATCAACTCCACCACCATGGATGGCGTGCCTCACCGAGTCAACAGCCCGCGTTACACCGGTTCGATGACTCGTCGAGCTCACTCATTCAAACGCAACAACAACAGCAATAATGAAATTGAGCTCCAAATAAACTCACCCAGATCACCCTTGGTTTCTGCTGAAGGCTCTGTTTTGAAAAGGAATCAGCATCATCATAAGGAGAAAAAGAACAAGTTTGGCCATTGGGTGTTCTTGCTCTTTTGTGGGGTATGCTTGTTTCTGGGTCTTCTCAAGATTTGTGCTTCTGCCTGGTGGTTCGGATCTAAAGTACACAGTACACACGAATCCATTATTCAGGAACTATCTGACTCCATCACTAGTCGAAATCTAATGGATCAAAGCTCCCATGGTTATGCATATAGGGAGGGAGCAAATGAGGTTGAACGAACTCTAAAGATGGTAACTACAGGGGTAATTGATAGCCAGGCTGGCATGGCTGAAGAATCAGGTGTCTGGTCTAGACCCAACTATGACAATTTCACCCAATGTATAGACCTGCCAAGAAATCATAAAAAGCTAGATGAAAAGACCAATGGCTACATTCTAGTAAATGCTAATGGTGGCCTGAATCAAATGAGATTTGGGATATGTGATATGGTTGCTGTTGCTAAGATTATGAAGGCAACACTTGTTCTTCCTTCTCTCGATCACACCTCTTACTGGGGTGATGCAAGTGGCTTCAAGGATTTATTTGACTGGAAACATTTTATTGAGACATTGAAGGATGATATCCACGTAGTTGAGACATTACCACCTGCCTATGCTGAAATTGAACCTTTCTCGAAAACTCCAATATCTTGGTCTAAGGCCAGTTACTACAAGAATGAGGTTCTTCCCCTGCTAAAGCAGCATAAAGTGATCTATTTCACCCATACCAATTCCAGACTTGCTAATAATGGAATTCCAAGCTCCATACAAAAGCTAAGATGTCGTGTAAATTATAGAGCATTGAAATATTCAGCTCCGATTGAAGAATTCGGAAGCAAATTAATATCTAGAATGCGACAGAATGAAAATCCTTATCTCGCGCTTCATTTGAGGTATGAGAAGGATATGCTTGCATTTACTGGCTGCAGTCACAATTTGACAGCAGAAGAAGATGAAGAGCTACGACAGATGCGGTATGAAGTTGGTCACTGGAAGGAGAAGGAGATTAATGGGACTGAGAGGAGATTGACTGGAGGTTGTCCATTAACTCCTAGGGAAACTTCCCTATTGCTTAGAGCACTAGGTTTTCCATCACAAACCAGGATTTATCTGGTAGCTGGAGAAGCATATGGTAGAGGAAGTATGAAATATCTTGAGGATGCTTTCCCCAACATTTTCTCTCATTCCTCTCTGTCTTCTGAAGAAGAGTTGAATCCTTTCAAGAATCACCAGAACATGTTAGCTGGCATAGACTATATTGTTGCACTTCAGAGTGATGTATTTCTCTATACTTATGATGGAAATATGGCAAAGGCAGTACAAGGCCATAGGCACTTCGAAAACTTCAAGAAGACTATCAATCCAGACAAGGTAAATTTTGTTAAACTCGTTGATAAGTTGGATGAAGGAAAAATTTCTTGGAAGAAGTTCAGCTCCAAGGTAAAAAGGCTGCATGAAGATCGAATCGGTGCTCCGTATCCCAGGGAGCGGGGAGAATTTCCTAAGCTAGAGGAAAGTTTTTATGCAAATCCTCTGCCAGGATGTATATGTGAAAGAAAATTAGATACTTCACAGTAG

Predicted protein sequences of Glyma15g19530

Limit To All Plant Sequences

>Glyma15g19530.1   sequence type=predicted peptide   gene model=Glyma15g19530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLTNMAHNNINSTTMDGVPHRVNSPRYTGSMTRRAHSFKRNNNSNNEIELQINSPRSPLVSAEGSVLKRNQHHHKEKKNKFGHWVFLLFCGVCLFLGLLKICASAWWFGSKVHSTHESIIQELSDSITSRNLMDQSSHGYAYREGANEVERTLKMVTTGVIDSQAGMAEESGVWSRPNYDNFTQCIDLPRNHKKLDEKTNGYILVNANGGLNQMRFGICDMVAVAKIMKATLVLPSLDHTSYWGDASGFKDLFDWKHFIETLKDDIHVVETLPPAYAEIEPFSKTPISWSKASYYKNEVLPLLKQHKVIYFTHTNSRLANNGIPSSIQKLRCRVNYRALKYSAPIEEFGSKLISRMRQNENPYLALHLRYEKDMLAFTGCSHNLTAEEDEELRQMRYEVGHWKEKEINGTERRLTGGCPLTPRETSLLLRALGFPSQTRIYLVAGEAYGRGSMKYLEDAFPNIFSHSSLSSEEELNPFKNHQNMLAGIDYIVALQSDVFLYTYDGNMAKAVQGHRHFENFKKTINPDKVNFVKLVDKLDEGKISWKKFSSKVKRLHEDRIGAPYPRERGEFPKLEESFYANPLPGCICERKLDTSQ*

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