Glyma15g19520 - SoyBase

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Report for Sequence Feature Glyma15g19520

Feature Type:	gene_model
Chromosome:	Gm15
Start:	16843488
stop:	16852479
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g19520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45550	AT	Annotation by Michelle Graham. TAIR10: Mob1/phocein family protein \| chr5:18462284-18464840 FORWARD LENGTH=215	SoyBase	E_val: 3.00E-145	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009553	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac development	SoyBase	N/A	ISS
GO:0009554	GO-bp	Annotation by Michelle Graham. GO Biological Process: megasporogenesis	SoyBase	N/A	ISS
GO:0009556	GO-bp	Annotation by Michelle Graham. GO Biological Process: microsporogenesis	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
KOG0440	KOG	Cell cycle-associated protein Mob1-1	JGI		ISS
PTHR22599	Panther	MPS ONE BINDER KINASE ACTIVATOR-LIKE (MOB)	JGI		ISS
PTHR22599:SF8	Panther	MPS ONE BINDER KINASE ACTIVATOR-LIKE 1 (MOB1 HOMOLOG 1) (MOB1)	JGI		ISS
PF03637	PFAM	Mob1/phocein family	JGI		ISS
UniRef100_C6SXG2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6SXG2_SOYBN	SoyBase	E_val: 4.00E-159	ISS
UniRef100_Q949G5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mob1-like protein n=1 Tax=Medicago falcata RepID=Q949G5_MEDFA	SoyBase	E_val: 1.00E-153	ISS

Expression Patterns of Glyma15g19520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g19520

Paralog	Evidence	Comments
Glyma09g08040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g19520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g177000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g19520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g19520

Limit To All Plant Sequences

>Glyma15g19520.2   sequence type=transcript   gene model=Glyma15g19520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCTTCAAATTTTGGTTTTTGTGATTTTGATAGGACGACCCTTTGGTATTTGGATCTTCAAGAAAGAGAGACCCTTGGGATTTCGTCACCATGAGTCTCTTCGGTCTTGGAAACAGAAACCAAAAAACATTTCGTCCAAAAAAGAGCGCTCCATCTGGAAGTAAGGGTGCTCAACTTCAAAAACACATAGATGCCACGTTGGGTAGTGGGAACTTGAGGGAGGCTGTTAAACTGCCCCCTGGTGAAGATATTAATGAGTGGCTAGCTGTAAACACTGTGGACTTCTTTAATCAAGTGAATATCCTGTTTGGTACTCTTACAGAATTCTGCACGCCAAGTAACTGCCCTTCAATGACTGCAGGACCAAAGTATGAGTATCGATGGGCTGATGGTGTTACTATAAAGAAACCAATAGAGGTGTCTGCTCCAAAATATGTTGAGTATTTGATGGACTGGATTGAATCTCAGCTAGATGATGAAACAATTTTCCCTCAAAGATTGGGGGCTCCCTTTCCAACCAATTTCCGAGATGTTGTCAAGACAATTTTCAAGCGACTATTCCGTGTATATGCCCACATTTACCACTCACATTTTCAGAAGATAGTGAGTTTGAAGGAAGAAGCTCACCTTAATACTTGCTTCAAGCACTTTGTTTTATTTACTTGGGAATTCCGTTTGATCGACAAAGTAGAGTTGGCACCTCTTGAGGACCTTGTTGAATCTATTATTCAGTTATAGTGCTGTTGGTGTTTTCTTTCCCTTAATTTTGGGGAGATATTAAACATTGAAAAAGTTGGTTATACATTTTTGTACCCCCTTGTAAAAATACTTGCTAAATGAAAAATCTTTATCACCCCTTATGTATTTGGCTCTTAATTGTTGTGATGGTTGCTCAATAACAATAATCGTGTGAATCAAGCGAAAACCTGCTTGTGCGGCAAGGAAAATAATAGATGAACTGAAGCTTTGTATTTTTTGGCAGATGTTTTAGAGTCCTCTTTTGTTTTTCTCCCCTCCCCCTAAATTAATAAAGGCTAGGGGAACATAATGGCTTTCTGAACAGAACAAGCAATTGGATATTTTATCCAATTTCTTCACTAAGATATCGCATTTACTATTCAATTTCTTTGCATTGTCAGTATTCATCCTTGAGAGTTGCTTT

Coding sequences of Glyma15g19520

Limit To All Plant Sequences

>Glyma15g19520.1   sequence type=CDS   gene model=Glyma15g19520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCTCTTCGGTCTTGGAAACAGAAACCAAAAAACATTTCGTCCAAAAAAGAGCGCTCCATCTGGAAGTAAGGGTGCTCAACTTCAAAAACACATAGATGCCACGTTGGGTAGTGGGAACTTGAGGGAGGCTGTTAAACTGCCCCCTGGTGAAGATATTAATGAGTGGCTAGCTGTAAACACTGTGGACTTCTTTAATCAAGTGAATATCCTGTTTGGTACTCTTACAGAATTCTGCACGCCAAGTAACTGCCCTTCAATGACTGCAGGACCAAAGTATGAGTATCGATGGGCTGATGGTGTTACTATAAAGAAACCAATAGAGGTGTCTGCTCCAAAATATGTTGAGTATTTGATGGACTGGATTGAATCTCAGCTAGATGATGAAACAATTTTCCCTCAAAGATTGGGGGCTCCCTTTCCAACCAATTTCCGAGATGTTGTCAAGACAATTTTCAAGCGACTATTCCGTGTATATGCCCACATTTACCACTCACATTTTCAGAAGATAGTGAGTTTGAAGGAAGAAGCTCACCTTAATACTTGCTTCAAGCACTTTGTTTTATTTACTTGGGAATTCCGTTTGATCGACAAAGTAGAGTTGGCACCTCTTGAGGACCTTGTTGAATCTATTATTCAGTTATAG

>Glyma15g19520.2   sequence type=CDS   gene model=Glyma15g19520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCTCTTCGGTCTTGGAAACAGAAACCAAAAAACATTTCGTCCAAAAAAGAGCGCTCCATCTGGAAGTAAGGGTGCTCAACTTCAAAAACACATAGATGCCACGTTGGGTAGTGGGAACTTGAGGGAGGCTGTTAAACTGCCCCCTGGTGAAGATATTAATGAGTGGCTAGCTGTAAACACTGTGGACTTCTTTAATCAAGTGAATATCCTGTTTGGTACTCTTACAGAATTCTGCACGCCAAGTAACTGCCCTTCAATGACTGCAGGACCAAAGTATGAGTATCGATGGGCTGATGGTGTTACTATAAAGAAACCAATAGAGGTGTCTGCTCCAAAATATGTTGAGTATTTGATGGACTGGATTGAATCTCAGCTAGATGATGAAACAATTTTCCCTCAAAGATTGGGGGCTCCCTTTCCAACCAATTTCCGAGATGTTGTCAAGACAATTTTCAAGCGACTATTCCGTGTATATGCCCACATTTACCACTCACATTTTCAGAAGATAGTGAGTTTGAAGGAAGAAGCTCACCTTAATACTTGCTTCAAGCACTTTGTTTTATTTACTTGGGAATTCCGTTTGATCGACAAAGTAGAGTTGGCACCTCTTGAGGACCTTGTTGAATCTATTATTCAGTTATAG

Predicted protein sequences of Glyma15g19520

Limit To All Plant Sequences

>Glyma15g19520.1   sequence type=predicted peptide   gene model=Glyma15g19520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLFGLGNRNQKTFRPKKSAPSGSKGAQLQKHIDATLGSGNLREAVKLPPGEDINEWLAVNTVDFFNQVNILFGTLTEFCTPSNCPSMTAGPKYEYRWADGVTIKKPIEVSAPKYVEYLMDWIESQLDDETIFPQRLGAPFPTNFRDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFVLFTWEFRLIDKVELAPLEDLVESIIQL*

>Glyma15g19520.2   sequence type=predicted peptide   gene model=Glyma15g19520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLFGLGNRNQKTFRPKKSAPSGSKGAQLQKHIDATLGSGNLREAVKLPPGEDINEWLAVNTVDFFNQVNILFGTLTEFCTPSNCPSMTAGPKYEYRWADGVTIKKPIEVSAPKYVEYLMDWIESQLDDETIFPQRLGAPFPTNFRDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFVLFTWEFRLIDKVELAPLEDLVESIIQL*

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