Report for Sequence Feature Glyma15g19470
Feature Type: gene_model
Chromosome: Gm15
Start: 16774725
stop: 16789504
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g19470
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G35560 AT
Annotation by Michelle Graham. TAIR10: DENN (AEX-3) domain-containing protein | chr5:13742458-13747464 REVERSE LENGTH=765
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR15288 Panther
SUPPRESSION OF TUMORIGENICITY 5 (ST5)
JGI ISS
PF02141 PFAM
DENN (AEX-3) domain
JGI ISS
PF03456 PFAM
uDENN domain
JGI ISS
UniRef100_B9RRB9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Suppression of tumorigenicity, putative n=1 Tax=Ricinus communis RepID=B9RRB9_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI000233B8EC UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233B8EC related cluster n=1 Tax=unknown RepID=UPI000233B8EC
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g19470
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g19470
Paralog Evidence Comments
Glyma09g08000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g19470 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g176600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g19470
Coding sequences of Glyma15g19470
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g19470.1 sequence type=CDS gene model=Glyma15g19470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGGAGTGACAAAGGAGGACGAGTCGGGTAGTCCTAGTTGGGGTGCTTCATTTTTTACACAGACAACAGAGGATGTGGCTAGAGCTGTTGCTGCTGCAATGAATTCTCCGAGGCCATCTGTGGTATATTCATCGAAAAATGATCATGGTGGAAGCCAACTTCAAAAGCTACAGTATCAAGTTACGAAAATGATAAAAGGATTTTCTCGCCCTACAGAAGTTAAATATACAAATTACAATCCAGAAATCTTGACAACTCAGAAGCGTCAATGGGCTGCAAACTTTCAGTTACAGTACATGGACCATAAATCTTGGAAGGAGCCGACAAGGCTGTTTGAAAGCATGGTGGTTGTTGGACTTCATCCTAATTGTGATATTCAGGCACTGCAAAGGCAATATTTTTTAAGAAAGTCTGAAGGCCCTGGTAAATTGAGAAGTGCACTTGGTTATCAGAATCAATCCCGTGTGGAAGCGGAACCCAATTTAGAACCTCAGGTTTTATTTGTTTACCCTCCAGAAAAACAGATGCCTCTTAAAGACAAGGATCTTCTCTCTTTCTGCTTCCCTGGAGGCTTGGAGGTTAATGCTGTTGAGAGAACCCCTTCCATGAGTGAGTTGAATGAAATTCTATTTGGGCAGGAACACCTTAAACAAAGGGATCTGTCTTTTGTATTTAGGCTACAGGGTGCTGATAATTCAACACTTTACGGGTGCTGTGTCTTAGTTGAAGAGTTAGTGCAAAAACCCTCTGGATTTCTCTCCTTGATTTCTGATAAGCAGGCGACTTATTCTCCTTTGAAACGCCAACGCCATATATTAACCACACAGAGATGTTACTGCATTCTCTCAAGGCTCCCATTTTTTGAATTGCACTTTGGTGTATTGAATAGCATCTTCATGCAAGAACGGCTAGAGCGGTTGACGAGAATTGGTGGAGATTTAAATTTAGAATATGCTGAAGATAGCTGCGAGGAAGAAAATTTGGAGGAAAAATCTGAGTGCATGTTGGTGAATGATAGATTAGAAGATAGACATGATGACAATCCAATGATTTCTCAATCAAGCCTAAGAAATTCCTCACCTGAAAACATTGAGAATGATAGTAATTATCCCAAGAAACAAATGGTTAACGGGGATCTGCATACCTTTAAGGAGAGAGTCAATGATGACAATGCTGTGCCTAGTGATCCTGAAACTGATAGAAAAACTGTCAGAGAAGAATCTGGCCCTACCAATGCTGAAGAAAGCGATTTGTATGGAGATGCTTTTGTAACAAACAAACAGTCTGAAGATAGGCGTTTACCAAATGCCATTCTACCACTCCTGCGCTATTGCCAGTATGAAAGCTCTGAATCTTCTTGCAGTTTTCAGGGTTCTCCTTGTGATGACAGAAATTTTAGGAGTGATGCTGATGATACTGAGACAGAAGATGCTTCATTCTCTGGCCAAGAGGATTTAAATGACCTACAGGATATTCTTGAATGGGCGAAGGCAAATAACTGTGGACCATTACAGATTATAAGTGAGTATTATCGCTTAACTTGCCCTGCAAGGGGCTCAGCACTTAGGTTTCATCCTTTGGAACACCTGCATCCCTTGGAATATCACAGACCAGATGAGACAATTCTACATCTTGCTGGTTCAACTGTTGACTTGAAATCTTGCAGTACGGGTCTGGAATTTGCAGAGGCACATAATTCTCTTTTGGCTGAGGAGGAGGCAACTGCATTATCTATATGGGCTGTAGCTTGCATGTGTGGTACCTTGAGGCTTGAAAATGTGTTGGCATTCTTTGCTGGAGCTCTACTGGAGAAGCAGATTGTTTTTGTCTGTTCTAATTTGGGAATCCTATCTGCTTCAGTTTTATCAGTTATTCCACTAATCCGGCCCTACCAATGGCAAAGCTTGCTTATGCCGGTTTTACCAAATGGCATGCTCGAGTTTCTAGATGCACCTGTCCCCTACATAGTTGGCATCAAGAACAAGACCAATGAAGTTCAGTCAAAGTTAACTAATAATGTTATCCTGATTGACGCCAACAGAAACCAGGTGAAGTCATCAACAGTACCTCAACTGCCAAGGCAGAAAGAGTTAATGTCTTCTTTACGTCCTTATCATGAAACTCTTGTGGGAGAAAGTTACTTGGGTAGGAGAAGGCCAGTGTATGAATGCACGGAAGTGCAGACAGAAGCTGCTAAGGGTTTTTTATCGGTGTTAAGGTCTTATTTGGATTCTCTTTGCTATAACATTCGTTCTCATACAATAACCAATGTACAATCCAATGATGATAAGGTATCCTTGCTTTTGAAGGAGAGTTTCATTGACTCGTTTCCTTATCGTGATCGGCCTTTCATGAAGCTTTTCGTGGATACACAGCTCTTCTCTGTTCATACAGATATTGTTCTCTCTTTCTTCCAAAAGGAATAG
Predicted protein sequences of Glyma15g19470
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g19470.1 sequence type=predicted peptide gene model=Glyma15g19470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAGVTKEDESGSPSWGASFFTQTTEDVARAVAAAMNSPRPSVVYSSKNDHGGSQLQKLQYQVTKMIKGFSRPTEVKYTNYNPEILTTQKRQWAANFQLQYMDHKSWKEPTRLFESMVVVGLHPNCDIQALQRQYFLRKSEGPGKLRSALGYQNQSRVEAEPNLEPQVLFVYPPEKQMPLKDKDLLSFCFPGGLEVNAVERTPSMSELNEILFGQEHLKQRDLSFVFRLQGADNSTLYGCCVLVEELVQKPSGFLSLISDKQATYSPLKRQRHILTTQRCYCILSRLPFFELHFGVLNSIFMQERLERLTRIGGDLNLEYAEDSCEEENLEEKSECMLVNDRLEDRHDDNPMISQSSLRNSSPENIENDSNYPKKQMVNGDLHTFKERVNDDNAVPSDPETDRKTVREESGPTNAEESDLYGDAFVTNKQSEDRRLPNAILPLLRYCQYESSESSCSFQGSPCDDRNFRSDADDTETEDASFSGQEDLNDLQDILEWAKANNCGPLQIISEYYRLTCPARGSALRFHPLEHLHPLEYHRPDETILHLAGSTVDLKSCSTGLEFAEAHNSLLAEEEATALSIWAVACMCGTLRLENVLAFFAGALLEKQIVFVCSNLGILSASVLSVIPLIRPYQWQSLLMPVLPNGMLEFLDAPVPYIVGIKNKTNEVQSKLTNNVILIDANRNQVKSSTVPQLPRQKELMSSLRPYHETLVGESYLGRRRPVYECTEVQTEAAKGFLSVLRSYLDSLCYNIRSHTITNVQSNDDKVSLLLKESFIDSFPYRDRPFMKLFVDTQLFSVHTDIVLSFFQKE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
