Glyma15g19360 - SoyBase

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Report for Sequence Feature Glyma15g19360

Feature Type:	gene_model
Chromosome:	Gm15
Start:	16631690
stop:	16633549
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g19360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G35550	AT	Annotation by Michelle Graham. TAIR10: Duplicated homeodomain-like superfamily protein \| chr5:13726807-13727729 FORWARD LENGTH=258	SoyBase	E_val: 1.00E-44	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0010023	GO-bp	Annotation by Michelle Graham. GO Biological Process: proanthocyanidin biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_I1MHE2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHE2_SOYBN	SoyBase	E_val: 1.00E-129	ISS
UniRef100_Q0PJE9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB121 (Fragment) n=1 Tax=Glycine max RepID=Q0PJE9_SOYBN	SoyBase	E_val: 9.00E-128	ISS

Expression Patterns of Glyma15g19360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g19360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g176000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g19360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g19360

Limit To All Plant Sequences

>Glyma15g19360.2   sequence type=transcript   gene model=Glyma15g19360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCATATGGTTATAAATGCAGCAAACAGATAAAATATGATGCATTTTCAGGTTCCCACATGGAAACGAAGGACGACAGTGCTGAAAAAGAAGAAGCTTGGTCTTCTCATGAAGACGAAATTCTTTTGAACTATGTTCAAGTCCGTGGAGAAGGAAATTGGAGAAACCTTCCTAAAAGAGCTGGCTTGAAACGATGTGGTGAGAGTTGCAAACAACGATGGTTGAACTATCTTAAGCCAACCATATCTAGAGGAAACATTTCTTTAGATGAACATGAACTCATAATCAGACTGCATAAGCTCTTGGGGAATAGATGGTCTATCATTGCTGGACGATTACCAGGACGCACCGAAGAAGAGATCAAGAACTACTGGAATACCTATTTGAGAAAGGAGGCAGAAGAGAACCAAAACAATAAGAACGAATTTCCAAGCACAAGTATGACAACAACTAGCATGTCTAGTGTTCAATCTCCATGGTACTCCGAAAATTCCGTAGGTACCAATCCCACGGAATCTCCAAATCCTGTGATTAGACCTAAAGTTGTGAGGTTATCTAAGTTTAATTTGTCGTGCCAAGACAGGTAGCCTATGAAATACACAATGACCGTGATAATTGTTTTTGCTAGTTCCTATGGTGAAGTAATAAGGTGGACAAGTTCTTTCAACCATGTTGTGCTTTTTTATCATTTCTACGTGAATGGAAGGGACAGAGTGTTTTGCAATATGTATAAAGTAAAAGAAAAATAATATTATTCTACACCTAGCTAGAGAGATGAAGAGATAAAGGAGTGGATTATATATTGTGACAAAAGAAGGAGGTCAATTGAAAGAAATACTGAAGAGTGGCAAGTAGCTAGGTGTATGCACCGAGTGGGTGTTCATATATTATTATTTGAAGGTAAATTTAATTATTTGAAGGTTTAATTGTTGGGATCAGACTATTGACATCTCAATGTTATTGCATTTTGGTAAAGTTTCACCCTAGTTTTTGTGAGGCATGTG

Coding sequences of Glyma15g19360

Limit To All Plant Sequences

>Glyma15g19360.1   sequence type=CDS   gene model=Glyma15g19360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACGAAGGACGACAGTGCTGAAAAAGAAGAAGCTTGGTCTTCTCATGAAGACGAAATTCTTTTGAACTATGTTCAAGTCCGTGGAGAAGGAAATTGGAGAAACCTTCCTAAAAGAGCTGGCTTGAAACGATGTGGTGAGAGTTGCAAACAACGATGGTTGAACTATCTTAAGCCAACCATATCTAGAGGAAACATTTCTTTAGATGAACATGAACTCATAATCAGACTGCATAAGCTCTTGGGGAATAGTAACTATACGTGCCGCAGATGGTCTATCATTGCTGGACGATTACCAGGACGCACCGAAGAAGAGATCAAGAACTACTGGAATACCTATTTGAGAAAGGAGGCAGAAGAGAACCAAAACAATAAGAACGAATTTCCAAGCACAAGTATGACAACAACTAGCATGTCTAGTGTTCAATCTCCATGGTACTCCGAAAATTCCGTAGGTACCAATCCCACGGAATCTCCAAATCCTGTGATTAGACCTAAAGTTGTGAGGTTATCTAAGTTTAATTTGTCGTGCCAAGACAGGTAG

>Glyma15g19360.2   sequence type=CDS   gene model=Glyma15g19360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACGAAGGACGACAGTGCTGAAAAAGAAGAAGCTTGGTCTTCTCATGAAGACGAAATTCTTTTGAACTATGTTCAAGTCCGTGGAGAAGGAAATTGGAGAAACCTTCCTAAAAGAGCTGGCTTGAAACGATGTGGTGAGAGTTGCAAACAACGATGGTTGAACTATCTTAAGCCAACCATATCTAGAGGAAACATTTCTTTAGATGAACATGAACTCATAATCAGACTGCATAAGCTCTTGGGGAATAGATGGTCTATCATTGCTGGACGATTACCAGGACGCACCGAAGAAGAGATCAAGAACTACTGGAATACCTATTTGAGAAAGGAGGCAGAAGAGAACCAAAACAATAAGAACGAATTTCCAAGCACAAGTATGACAACAACTAGCATGTCTAGTGTTCAATCTCCATGGTACTCCGAAAATTCCGTAGGTACCAATCCCACGGAATCTCCAAATCCTGTGATTAGACCTAAAGTTGTGAGGTTATCTAAGTTTAATTTGTCGTGCCAAGACAGGTAG

Predicted protein sequences of Glyma15g19360

Limit To All Plant Sequences

>Glyma15g19360.1   sequence type=predicted peptide   gene model=Glyma15g19360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METKDDSAEKEEAWSSHEDEILLNYVQVRGEGNWRNLPKRAGLKRCGESCKQRWLNYLKPTISRGNISLDEHELIIRLHKLLGNSNYTCRRWSIIAGRLPGRTEEEIKNYWNTYLRKEAEENQNNKNEFPSTSMTTTSMSSVQSPWYSENSVGTNPTESPNPVIRPKVVRLSKFNLSCQDR*

>Glyma15g19360.2   sequence type=predicted peptide   gene model=Glyma15g19360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METKDDSAEKEEAWSSHEDEILLNYVQVRGEGNWRNLPKRAGLKRCGESCKQRWLNYLKPTISRGNISLDEHELIIRLHKLLGNRWSIIAGRLPGRTEEEIKNYWNTYLRKEAEENQNNKNEFPSTSMTTTSMSSVQSPWYSENSVGTNPTESPNPVIRPKVVRLSKFNLSCQDR*

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