Report for Sequence Feature Glyma15g19320
Feature Type: gene_model
Chromosome: Gm15
Start: 16594442
stop: 16598630
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g19320
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G12080 AT
Annotation by Michelle Graham. TAIR10: mechanosensitive channel of small conductance-like 10 | chr5:3898182-3900923 REVERSE LENGTH=734
SoyBase E_val: 0 ISS
GO:0006820 GO-bp
Annotation by Michelle Graham. GO Biological Process: anion transport
SoyBase N/A ISS
GO:0050982 GO-bp
Annotation by Michelle Graham. GO Biological Process: detection of mechanical stimulus
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0008381 GO-mf
Annotation by Michelle Graham. GO Molecular Function: mechanically-gated ion channel activity
SoyBase N/A ISS
KOG4629
KOG
Predicted mechanosensitive ion channel
JGI ISS
PF00924 PFAM
Mechanosensitive ion channel
JGI ISS
UniRef100_I1MHE0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MHE0_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9LYG9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Mechanosensitive ion channel protein 10 n=1 Tax=Arabidopsis thaliana RepID=MSL10_ARATH
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g19320
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g19320
Paralog Evidence Comments
Glyma09g07900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g19320 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g175800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g19320
Coding sequences of Glyma15g19320
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g19320.1 sequence type=CDS gene model=Glyma15g19320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGAAGACAAAGGCGTGGCAGACAAGAAAGTGACAAAGAACGAGGTGTTACTACGAATTTCAGACTCTGAAGAAGCCATGCATGCTGAGAAGGATCAAAGAGAGTCTAGAAGTTCCCTAGAAGCTGAAAGCAGTTCCCTTTCTCCTCAGCACAGCACCCACATAGGTAAAGGGTTTACAGATTCTCATGGTGAACTCACAGAGCTTGAGAATCTAAGAAACAAAGGTCAAGTTTCCACAGAGTTGGTGACAACTACAAAGAGGTTGATGGGTCGATCGGAATTTTCGAGGCCAAAGTCCAGAATGGTGGAGCCACCATGTCCAAAAGATGCAAACTTTGTTGAAGAACAGGCTCAAATGACAAGTTCCAATTCATCTGCATGGAATTCTCCCAACAAGAATGCTCCTGAAGCAACTATTGTTACCCCAAGAACCCCCTTGCCTGGGACTCCTGGGGAGGAAGAAGATGATGATGAAGAAGTGTACAAGACTGCACATGTTGAAATGAGGAAGAGATCTGGTAAGAAGTGTAGAGTATTGGGTTTTGTTGAGTGGTATGCTTTTGTTTGCATAATGGGGTTTTTAATTGCAAGCTTGACAGTTCATAAGTTGCAACATAGGGAAATCTGGGGTTTGGAACTGTGGAAATGGTGTGTGTTGGTGTCGGTTATACTATGTGGTAGACTGGTCACTGAGTGGTTTATCAATGTTCTGGTCTTCTTGATTGAGAGGAACTTCTTGTTTAAGAAGAAGGTCTTGTATTTTGTTTATGGTGTGCAGAAGAGTGTTCAGGGCTTTATATGGCTAAGTTTGGTTCTCTTGACATGGGTTCTGCTTTTCCACCACGGAGTGGAGAGAACCCGAAATGTTAGTAGGATTCTTAATTACATAACAAGGGCATTTGTTTCTTGTCTTATTGGAGCAGCTATATGGTTAGCCAAAACATTGTTCATAAAGCTGTTAGCTTCAAATTTTCAATCTACTAGATTTTTTGATAGGGTTCAAGAATCAATCTTTCATCAATATATTCTGAGGACACTTTCGGGTCTTCCCTTGATGAACATGTCTGCAAAAGTAGGCAAGACTTCAAGTAGTGGTCAACTCAGTTTTAAGACCATGATTAATGAGAATGAAGGGAAGGAAGAACAAGTCATTGATGTAGACAAGCTCAAGAAAATGAAACAAGAGAAAGTTTCTGCTTGGACTATGAAAGGGTTGATTGATGTGATAAGGAGTTCTGGGTTGTCTACCATCTCCTATACACCAGAGAGTGCCGATGAAGATGAGAGTGATCAGAAAGATAATGAAATTACTAGTGAGTGGGAGGCAAAGGCAGCTGCTTATAGAATTTTCAGGAATGTTGCCAAGCCAGGAAACAAGTATATTGAGAAGGATGACCTCTTGCGATTCATGAAAAATGAAAAAGTGGAAAATGTGCTTCCACTATTTGAAGGGGCAGTTGAGACAGGAAGAATTAAGAGGAAGTCTCTGAAGAACTGGCTGGTGAAAGTCTACCTTGAACGCCGATCACTTGTACATTCACTAAATGATACCAAAACTGCTGTTGATGACTTGAATATGCTTGCTTCTGTAATTGTGCTTATTGTGATCACTATTGTGTGGCTTCTTATAATGGGTTTCTTAAACACTCAAGTTCTTGTCTTTATTTCATCCCAGCTTTTACTTGTGGTTTTTATGTTTGGCAACACAGCTAAGACTGTATTTGAAGCTATTATATTTGTTTTTGTGATGCACCCGTTTGATGTTGGTGATCGCTGTGTCATTGATGGTGTTCAGATGGTTGTGGAAGAGATGAACATACTAAGTACAATCTTTTTGAGATATGACAATGAGAAGATTTTCTATCCAAATTCAGTTCTGGCAACCAAGCCAATCAGTAACTTCTACAGGAGTCCAGAAATGAGTGATTCTGTTGAATTTGCTGTTGATGTTTCTACTTCTATTGAAAGTATTGGAGCTTTAAAGACGAAGTTAAAAGCATATTTGGAGAGTAAGCCTCAACACTGGCGCCCCAACCACAGCGTATTGGTTAAGGATATTGAGAATGTAAATAAGATGAAAATGGCTTTTTATGTTACTCACACCATAAATTTTCAGAATTATGGGGATAAGAACAACCGAAGATCTGAATTAGTCCTGGAGTTAAAGAAAATTCTTGAAGATCTTAATATTAAATATCATCTGCTGCCCCAAGAAGTTCATCTCAGCCATGTAAGGTCATAA
Predicted protein sequences of Glyma15g19320
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g19320.1 sequence type=predicted peptide gene model=Glyma15g19320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEEDKGVADKKVTKNEVLLRISDSEEAMHAEKDQRESRSSLEAESSSLSPQHSTHIGKGFTDSHGELTELENLRNKGQVSTELVTTTKRLMGRSEFSRPKSRMVEPPCPKDANFVEEQAQMTSSNSSAWNSPNKNAPEATIVTPRTPLPGTPGEEEDDDEEVYKTAHVEMRKRSGKKCRVLGFVEWYAFVCIMGFLIASLTVHKLQHREIWGLELWKWCVLVSVILCGRLVTEWFINVLVFLIERNFLFKKKVLYFVYGVQKSVQGFIWLSLVLLTWVLLFHHGVERTRNVSRILNYITRAFVSCLIGAAIWLAKTLFIKLLASNFQSTRFFDRVQESIFHQYILRTLSGLPLMNMSAKVGKTSSSGQLSFKTMINENEGKEEQVIDVDKLKKMKQEKVSAWTMKGLIDVIRSSGLSTISYTPESADEDESDQKDNEITSEWEAKAAAYRIFRNVAKPGNKYIEKDDLLRFMKNEKVENVLPLFEGAVETGRIKRKSLKNWLVKVYLERRSLVHSLNDTKTAVDDLNMLASVIVLIVITIVWLLIMGFLNTQVLVFISSQLLLVVFMFGNTAKTVFEAIIFVFVMHPFDVGDRCVIDGVQMVVEEMNILSTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSVEFAVDVSTSIESIGALKTKLKAYLESKPQHWRPNHSVLVKDIENVNKMKMAFYVTHTINFQNYGDKNNRRSELVLELKKILEDLNIKYHLLPQEVHLSHVRS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
