SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g19260

Feature Type:gene_model
Chromosome:Gm15
Start:16462245
stop:16464733
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g19260
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G25440AT Annotation by Michelle Graham. TAIR10: zinc finger WD40 repeat protein 1 | chr4:13007107-13009381 REVERSE LENGTH=430 SoyBaseE_val: 3.00E-146ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG0645 KOG WD40 repeat protein JGI ISS
PTHR22844Panther F-BOX AND WD40 DOMAIN PROTEIN JGI ISS
PF00400PFAM WD domain, G-beta repeat JGI ISS
UniRef100_G7KS64UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KS64_MEDTR SoyBaseE_val: 2.00E-168ISS
UniRef100_UPI000233AE9EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233AE9E related cluster n=1 Tax=unknown RepID=UPI000233AE9E SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g19260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g19260 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g174900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g19260
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g19260
>Glyma15g19260.1   sequence type=CDS   gene model=Glyma15g19260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATACAAAGTTTGCACGAAGGACTGAGCGCATTGGTAGAACAACATGCTCTTATTGGAGAGCTGGAAAATGTAACAGAAATCCATGCAGATTTGTGCACATAGAGACACCATCTCCACCTGCTGCTTGTGGTTATGGCAATACTGCATATAGCTACGGAAAAAAGCCCCATTCCTCCTCTGAGAATACCCCGAAATATGGTTCAAAGAAAGCATTGCTTAGAGATAATGGAGATAGAGGAGATGCAACAAGGGTTGCTAAGGCTTTCAAGAAATCATCACCAAGGATATGTAAATACTGGATCAACAACAATTGTGTACATGGTGAACAATGCCTGTATCTGCATTCATGGTTTCGTGGTGATGGGTTTTCCACAGTAACGAAACTTCAAGAACATAAGAAGGTTATCACTGGCATCGCACTTCCTGTTGGATCCGACAAACTTTATTCTGGCAGCACTGATGGGACAGTTAGGATATGGGACTGCCATACTGGTCAATGTGCTAAAGTCATCAATCTTGGTGCTGAGGTTACCTCTTTGATCAGTGAGGGGTCATGGATTTTTGTTGGTCTGCAAAATGCTGTCAAGGCTTGGAATATCCAGACCATGTCAGAGTTTACTCTTGATGGACCCAAAGGCCGAGTCCGTGCCATGACTGTTGGCAACAATACACTCTTTGCTGCTGCAGAGGATGGTGTCATTTTTGCTTGGAGAGGAAGCTCTAAAGCCGATTCTCCTTTTGAACTGGTTGCGTCACTCACTGGCCACACTAAAGCAGTGGTTTGTCTGGCGGTTGGATGCAAGATGCTGTACTCCGGGTCCATGGACCAAAGCATAAAGGTCTGGGACATGGATACATTACAGTGTACAATGACACTAAATGATCATACTGATGCAGTCACATCCCTTATCTGTTGGGATCAATATCTGTTGTCAAGTTCATCTGACCGCACAATTAAGGTCTGGGCTTGCATTGAAGCAGGATCTTTGGAAGTGATATATACACACACCGAAGAAAATGGTGTTGTTTCACTTTTTGGGATGCCTGATGCAGAGGGAAAGCCAATATTATTTTCCTCGTGCAGAGACAATTCAGTTCACATGTATGAATTGCCATCATTTTCAGAGAGGGGACGTTTATTTGCCAAGAAAGATGTGGCATTGATTGAGTTAGGTCCTGGTGGCCTCTTCTTCACTGGAGATGAGAGTGGTTTGCTGATGGTGTGGAAATGGTTGGAGGTACCCAAGGTGGCATCCTCTTGA
Predicted protein sequences of Glyma15g19260
>Glyma15g19260.1   sequence type=predicted peptide   gene model=Glyma15g19260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTKFARRTERIGRTTCSYWRAGKCNRNPCRFVHIETPSPPAACGYGNTAYSYGKKPHSSSENTPKYGSKKALLRDNGDRGDATRVAKAFKKSSPRICKYWINNNCVHGEQCLYLHSWFRGDGFSTVTKLQEHKKVITGIALPVGSDKLYSGSTDGTVRIWDCHTGQCAKVINLGAEVTSLISEGSWIFVGLQNAVKAWNIQTMSEFTLDGPKGRVRAMTVGNNTLFAAAEDGVIFAWRGSSKADSPFELVASLTGHTKAVVCLAVGCKMLYSGSMDQSIKVWDMDTLQCTMTLNDHTDAVTSLICWDQYLLSSSSDRTIKVWACIEAGSLEVIYTHTEENGVVSLFGMPDAEGKPILFSSCRDNSVHMYELPSFSERGRLFAKKDVALIELGPGGLFFTGDESGLLMVWKWLEVPKVASS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo