Glyma15g19150 - SoyBase

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Report for Sequence Feature Glyma15g19150

Feature Type:	gene_model
Chromosome:	Gm15
Start:	16233298
stop:	16236220
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g19150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G25440	AT	Annotation by Michelle Graham. TAIR10: zinc finger WD40 repeat protein 1 \| chr4:13007107-13009381 REVERSE LENGTH=430	SoyBase	E_val: 2.00E-145	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0645	KOG	WD40 repeat protein	JGI		ISS
PTHR22844	Panther	F-BOX AND WD40 DOMAIN PROTEIN	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7KS64	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KS64_MEDTR	SoyBase	E_val: 5.00E-166	ISS
UniRef100_UPI000233AD1D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AD1D related cluster n=1 Tax=unknown RepID=UPI000233AD1D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g19150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g19150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma15g19150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g19150

Limit To All Plant Sequences

>Glyma15g19150.3   sequence type=transcript   gene model=Glyma15g19150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTCTCCGAACGCGAAAATCTAATACTTCTTTTAGGGTTTGTGATGGATGATCTGCGAGAATCTATGTTCTATCCGACTTCATTTATCTCAGTGAAGTTTTCTGCGCTTCCACGACGCAAATATAGGGTTTCGCGTTTAGGGTTCCTTTCAATTTATTTATTATCGGGGTTTTCAAAAGGATCGGCAACACCCTAATTTGGGGTTTGGGGAGAGTCTCTATTGACGTTGCTGATCAGGGTTAAATTATTGGTCTTTGATCCAAGTCTTCAATGGGTTTTGATCTTGATGTTGTTGATCTTCCTCGATCAACATAGTTTGTTGCCGTTCATCACTTGCTTTACGATTGTTATTTTGGGAATGGAAAATTTGGGAGCCAAAAGGTTTTGGGTTTTGGATGAAGAATTAAGTCTATGGCTGGGATTTAATCAATGAGTTAATGACTGAAAGCATGAGCCATGGAGAATTTTATTGATAGGATACAGTACCTGATCTGGGATGTCATTACAATGCCATGTGTGTTTTTTAGAATATCATGGATACAAAGTTTGCACGAAGGACTGAGCGCATTGGTAGAACAACATGCTCTTATTGGAGAGCTGGAAAATGTAACAGAAATCCATGCAGATTTGTGCACATAGAGACACCATCTCCACCTGCTGCTTGTGGTTATGGCAATACTGCATATAGCTACGGAAAAAAGCCCCATTCCTCCTCTGAGAATACCCCGAAATATGGTTCAAAGAAAGCATTGCTTGGAGATAATGGAGATAGAGGAGATGCAACAAGGGTTGCTAAGGCTTTCAAGAAATCATCACCAAGGATATGTAAATACTGGATCAACAACAATTGTGCACATGGTGAACAATGCCTGTATCTGCATTCATGGTTTCATGGTGATGGGTTTTCCACAGTAACGAAACTTCATGAACATAAGAAGGTTATCACTGGCATCGCACTTCCTGTTGGATCCGACAAACTTTATTCTGGCAGCACTGATGGGACAGTTAGGATATGGGACTGCCATACTGGTCAATGTGCTAAAGTCATCAATCTTGGTGCTGAGGTTACCTCTTTGATCAGTGAGGGGTCATGGATTTTTGTTGGTCTGCAAAATGCTGTCAAGGCTTGGAATATCCAGGCCATGTCAGAGTTTACTCTTGATGGACCCAAAGGCCGAGTCCGTGCCATGACTGTTGGCAACAATACACTCTTTGCTGTTGCAGAGGATGGTGTCATTTTTGCTTGGAGAGGAAGCTCTAAAGCCGATTCTCCTTTTGAACTGGTTGCGTCTCTCACTGGCCACACTAAAGCAGTGGTTTGTCTGGCGGTTGGATGCAAGATGCTGTACTCCGGGTCCATGGACCAAAGCATAAAGGTCTGGGACATGGATACATTACAGTGTACAATGACACTAAATGATCATACTGATGCAGTCACATCCCTTATCTGTTGGGATCAATATCTGTTGTCAAGTTCATCTGACCACACAATTAAAGTCTGGGCTTGCATTGAAGCAGGATCTTTGGAAGTAATATATACACACACCGAAGAAAATGGTGTTGTTTCACTCTTTGGGATGCCTGATGCAGAGGGAAAGCCAATATTATTTTCCTCGTGCAGAGACAATTCAGTTCACATGTATGAATTGCCTTCATTTTCAGAGAGGGGACGTTTATTTGCCAAGAAAGATGTGGCATTGATTGAGTTAGGTCCTGGTGGCCTCTTCTTCACTGGAGATGAGAGTGGTTTGCTGATGGTATGGAAATGGTTGGAGGTACCTAAGGTGGCATCCTCTTGA

Coding sequences of Glyma15g19150

Limit To All Plant Sequences

>Glyma15g19150.2   sequence type=CDS   gene model=Glyma15g19150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATACAAAGTTTGCACGAAGGACTGAGCGCATTGGTAGAACAACATGCTCTTATTGGAGAGCTGGAAAATGTAACAGAAATCCATGCAGATTTGTGCACATAGAGACACCATCTCCACCTGCTGCTTGTGGTTATGGCAATACTGCATATAGCTACGGAAAAAAGCCCCATTCCTCCTCTGAGAATACCCCGAAATATGGTTCAAAGAAAGCATTGCTTGGAGATAATGGAGATAGAGGAGATGCAACAAGGGTTGCTAAGGCTTTCAAGAAATCATCACCAAGGATATGTAAATACTGGATCAACAACAATTGTGCACATGGTGAACAATGCCTGTATCTGCATTCATGGTTTCATGGTGATGGGTTTTCCACAGTAACGAAACTTCATGAACATAAGAAGGTTATCACTGGCATCGCACTTCCTGTTGGATCCGACAAACTTTATTCTGGCAGCACTGATGGGACAGTTAGGATATGGGACTGCCATACTGGTCAATGTGCTAAAGTCATCAATCTTGGTGCTGAGGTTACCTCTTTGATCAGTGAGGGGTCATGGATTTTTGTTGGTCTGCAAAATGCTGTCAAGGCTTGGAATATCCAGGCCATGTCAGAGTTTACTCTTGATGGACCCAAAGGCCGAGTCCGTGCCATGACTGTTGGCAACAATACACTCTTTGCTGTTGCAGAGGATGGTGTCATTTTTGCTTGGAGAGGAAGCTCTAAAGCCGATTCTCCTTTTGAACTGGTTGCGTCTCTCACTGGCCACACTAAAGCAGTGGTTTGTCTGGCGGTTGGATGCAAGATGCTGTACTCCGGGTCCATGGACCAAAGCATAAAGGTCTGGGACATGGATACATTACAGTGTACAATGACACTAAATGATCATACTGATGCAGTCACATCCCTTATCTGTTGGGATCAATATCTGTTGTCAAGTTCATCTGACCACACAATTAAAGTCTGGGCTTGCATTGAAGCAGGATCTTTGGAAGTAATATATACACACACCGAAGAAAATGGTGTTGTTTCACTCTTTGGGATGCCTGATGCAGAGGGAAAGCCAATATTATTTTCCTCGTGCAGAGACAATTCAGTTCACATGTATGAATTGCCTTCATTTTCAGAGAGGGGACGTTTATTTGCCAAGAAAGATGTGGCATTGATTGAGTTAGGTCCTGGTGGCCTCTTCTTCACTGGAGATGAGAGTGGTTTGCTGATGGTATGGAAATGGTTGGAGGTACCTAAGGTGGCATCCTCTTGA

>Glyma15g19150.3   sequence type=CDS   gene model=Glyma15g19150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATACAAAGTTTGCACGAAGGACTGAGCGCATTGGTAGAACAACATGCTCTTATTGGAGAGCTGGAAAATGTAACAGAAATCCATGCAGATTTGTGCACATAGAGACACCATCTCCACCTGCTGCTTGTGGTTATGGCAATACTGCATATAGCTACGGAAAAAAGCCCCATTCCTCCTCTGAGAATACCCCGAAATATGGTTCAAAGAAAGCATTGCTTGGAGATAATGGAGATAGAGGAGATGCAACAAGGGTTGCTAAGGCTTTCAAGAAATCATCACCAAGGATATGTAAATACTGGATCAACAACAATTGTGCACATGGTGAACAATGCCTGTATCTGCATTCATGGTTTCATGGTGATGGGTTTTCCACAGTAACGAAACTTCATGAACATAAGAAGGTTATCACTGGCATCGCACTTCCTGTTGGATCCGACAAACTTTATTCTGGCAGCACTGATGGGACAGTTAGGATATGGGACTGCCATACTGGTCAATGTGCTAAAGTCATCAATCTTGGTGCTGAGGTTACCTCTTTGATCAGTGAGGGGTCATGGATTTTTGTTGGTCTGCAAAATGCTGTCAAGGCTTGGAATATCCAGGCCATGTCAGAGTTTACTCTTGATGGACCCAAAGGCCGAGTCCGTGCCATGACTGTTGGCAACAATACACTCTTTGCTGTTGCAGAGGATGGTGTCATTTTTGCTTGGAGAGGAAGCTCTAAAGCCGATTCTCCTTTTGAACTGGTTGCGTCTCTCACTGGCCACACTAAAGCAGTGGTTTGTCTGGCGGTTGGATGCAAGATGCTGTACTCCGGGTCCATGGACCAAAGCATAAAGGTCTGGGACATGGATACATTACAGTGTACAATGACACTAAATGATCATACTGATGCAGTCACATCCCTTATCTGTTGGGATCAATATCTGTTGTCAAGTTCATCTGACCACACAATTAAAGTCTGGGCTTGCATTGAAGCAGGATCTTTGGAAGTAATATATACACACACCGAAGAAAATGGTGTTGTTTCACTCTTTGGGATGCCTGATGCAGAGGGAAAGCCAATATTATTTTCCTCGTGCAGAGACAATTCAGTTCACATGTATGAATTGCCTTCATTTTCAGAGAGGGGACGTTTATTTGCCAAGAAAGATGTGGCATTGATTGAGTTAGGTCCTGGTGGCCTCTTCTTCACTGGAGATGAGAGTGGTTTGCTGATGGTATGGAAATGGTTGGAGGTACCTAAGGTGGCATCCTCTTGA

Predicted protein sequences of Glyma15g19150

Limit To All Plant Sequences

>Glyma15g19150.2   sequence type=predicted peptide   gene model=Glyma15g19150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTKFARRTERIGRTTCSYWRAGKCNRNPCRFVHIETPSPPAACGYGNTAYSYGKKPHSSSENTPKYGSKKALLGDNGDRGDATRVAKAFKKSSPRICKYWINNNCAHGEQCLYLHSWFHGDGFSTVTKLHEHKKVITGIALPVGSDKLYSGSTDGTVRIWDCHTGQCAKVINLGAEVTSLISEGSWIFVGLQNAVKAWNIQAMSEFTLDGPKGRVRAMTVGNNTLFAVAEDGVIFAWRGSSKADSPFELVASLTGHTKAVVCLAVGCKMLYSGSMDQSIKVWDMDTLQCTMTLNDHTDAVTSLICWDQYLLSSSSDHTIKVWACIEAGSLEVIYTHTEENGVVSLFGMPDAEGKPILFSSCRDNSVHMYELPSFSERGRLFAKKDVALIELGPGGLFFTGDESGLLMVWKWLEVPKVASS*

>Glyma15g19150.3   sequence type=predicted peptide   gene model=Glyma15g19150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTKFARRTERIGRTTCSYWRAGKCNRNPCRFVHIETPSPPAACGYGNTAYSYGKKPHSSSENTPKYGSKKALLGDNGDRGDATRVAKAFKKSSPRICKYWINNNCAHGEQCLYLHSWFHGDGFSTVTKLHEHKKVITGIALPVGSDKLYSGSTDGTVRIWDCHTGQCAKVINLGAEVTSLISEGSWIFVGLQNAVKAWNIQAMSEFTLDGPKGRVRAMTVGNNTLFAVAEDGVIFAWRGSSKADSPFELVASLTGHTKAVVCLAVGCKMLYSGSMDQSIKVWDMDTLQCTMTLNDHTDAVTSLICWDQYLLSSSSDHTIKVWACIEAGSLEVIYTHTEENGVVSLFGMPDAEGKPILFSSCRDNSVHMYELPSFSERGRLFAKKDVALIELGPGGLFFTGDESGLLMVWKWLEVPKVASS*

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