Glyma15g19120 - SoyBase

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Report for Sequence Feature Glyma15g19120

Feature Type:	gene_model
Chromosome:	Gm15
Start:	16171857
stop:	16174994
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g19120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G25440	AT	Annotation by Michelle Graham. TAIR10: zinc finger WD40 repeat protein 1 \| chr4:13007107-13009381 REVERSE LENGTH=430	SoyBase	E_val: 3.00E-110	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0315	KOG	G-protein beta subunit-like protein (contains WD40 repeats)	JGI		ISS
PTHR22844	Panther	F-BOX AND WD40 DOMAIN PROTEIN	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7KS64	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KS64_MEDTR	SoyBase	E_val: 6.00E-136	ISS
UniRef100_I1MHC3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHC3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g19120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g19120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g174300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g19120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g19120

Limit To All Plant Sequences

>Glyma15g19120.2   sequence type=transcript   gene model=Glyma15g19120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAATAGAAGCCTTATTTTGCTCTCTGTTCTTTCTCTCAACAATCGTTCCAACAAATCAAGAGAGTTGAATTCTGAAGCTTTTGCTACGTTTCTACCATTCAGAATATCATGGATACAAAGTTTGCACGAAGGACTGAGCGCATTGGTAGAACAACATGCTCTTATTGGAGAGCTGGAAGATGTAACAGAAATCCTTGCAGATTTTTGCACATAGAGACACCATCTCCACCTGCTGCTTGTGGTTATGGCAATACTGCATATAACTACGGAAAAAAGCCCCATTCCTCCTTTGAGAATACCCTGAAATATGGTTCAAAGAAAGCATTGCTTAGAGATTATGGAGATAGAGGAGATGCAACAAGGGTTGCTAAGGCTTTCAAGAAATCATCACCAAGGATATGTAAATACTGGATCAACAACAATTGTGTACATGGTGAACAATTCCTGTATCTGCATTCATGGTTTCGTGGTGATGGGTTTTCCACTGTAATGAAACTTCAAGAACATAAGAAGGTTATCACTGGCATCGCACTTCCTGTTGGATCCGACAAACTTTATTCTGGCAGCACTGATGGGACAGTTAGGATATGGGACTGCCATACTGGTCAATGTGCTAAAGTCATCAATCTTGGTGCTGAGGTTACCTCTTTGATCAGTGAGGGGTCATGGATTTTTGTTGGTCTGCAAAATGCTGTCAAGGCTTGGAATATCCAGACCATGTCAGAGTTTACTCTTGATGGACCCAAAGGCCGAGTCCGTGCCATGACTGTTGGCAACAATACACTCTTTGCTGGTGCAGAGGATGGTGTCATTTTTGCTTGGAGAGGAAGCTCTAAAGCCGATTCTCCTTTTGAACTGGTTGTGTCACTCACTGGCCACACTAAAGCAGTGGTTTGTCTGGCGGTTGGATGCAAGATGCTGTACTCCGGGTCCATGGACCAAAGCATAAAGGTCTGGGACATGGATACATTACAGTGTACAATGACACTAAATGATCATACTGACGTAGTCACATCCCTTATCTGTTGGGATCAATATCTGTTGTCAAGTTCATCTGACCGCACAATTAAGGTCTGGGCTTGCATTGAAGCAGGATCTTTGGAAGTGATATATACACACACCGAAGAAAATGGTGTTGTTTCACTTTTTGGGACGTTTATTTGCCAAGAAAGATGTGGCATTGATTGAGTTATGTCCTGGTGGCCTCTTCTTCACTGGAGATGAGAGTGGTTTGCTGATGGTGTGGAAATGGTTGGAGGTACCCAAGGTGGCATCCTCTTGACATGTGTTTCCTTTCAACATTGGAGTTGTATTATCCCATCTATTTCCTCTTGAAGCAGATGGTGATAAGGATGAATTTATTTGTCTGAGCAGTAAATTCACTGTAAAAACAATTGTATAGAAATTGACAATTTTATAGAAATACCAATTTCATTCTTTTATATTCTTCCCAGCAGATGTAATCTTCTCCTGCTTTGATAAATATATTACTATTGTAAGTAACATGGTTTGTAATGAAGTCTGTTTTCAAATTCTTTCTATCATTATCAAAGAAAGATGTGGCATTGATTGAGTTAGGTCCTGGTGGCCTCTTCTTCACTGGAGATGAGAGTGGTTTGCTGATGGTGTGGAAATGGTTGGAGGTACCCAAGGTGGCATCCTCTTGACGTGTTTCCTTTCAACATTGGAGTTGTATTATCCCATCTATTTCCTCTTGAAGCAGATGGTGATAAGGATGAATTTATTTGTCTGAGCAGTAAATTCACTGTAAAAACAATTGTATAGAAATTGACAATTTTATAGAAATACCAATTTCATTCTTTTATATTCTTCCCAGCAGA

Coding sequences of Glyma15g19120

Limit To All Plant Sequences

>Glyma15g19120.1   sequence type=CDS   gene model=Glyma15g19120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATACAAAGTTTGCACGAAGGACTGAGCGCATTGGTAGAACAACATGCTCTTATTGGAGAGCTGGAAGATGTAACAGAAATCCTTGCAGATTTTTGCACATAGAGACACCATCTCCACCTGCTGCTTGTGGTTATGGCAATACTGCATATAACTACGGAAAAAAGCCCCATTCCTCCTTTGAGAATACCCTGAAATATGGTTCAAAGAAAGCATTGCTTAGAGATTATGGAGATAGAGGAGATGCAACAAGGGTTGCTAAGGCTTTCAAGAAATCATCACCAAGGATATGTAAATACTGGATCAACAACAATTGTGTACATGGTGAACAATTCCTGTATCTGCATTCATGGTTTCGTGGTGATGGGTTTTCCACTGTAATGAAACTTCAAGAACATAAGAAGGTTATCACTGGCATCGCACTTCCTGTTGGATCCGACAAACTTTATTCTGGCAGCACTGATGGGACAGTTAGGATATGGGACTGCCATACTGGTCAATGTGCTAAAGTCATCAATCTTGGTGCTGAGGTTACCTCTTTGATCAGTGAGGGGTCATGGATTTTTGTTGGTCTGCAAAATGCTGTCAAGGCTTGGAATATCCAGACCATGTCAGAGTTTACTCTTGATGGACCCAAAGGCCGAGTCCGTGCCATGACTGTTGGCAACAATACACTCTTTGCTGGTGCAGAGGATGGTGTCATTTTTGCTTGGAGAGGAAGCTCTAAAGCCGATTCTCCTTTTGAACTGGTTGTGTCACTCACTGGCCACACTAAAGCAGTGGTTTGTCTGGCGGTTGGATGCAAGATGCTGTACTCCGGGTCCATGGACCAAAGCATAAAGGTCTGGGACATGGATACATTACAGTGTACAATGACACTAAATGATCATACTGACGTAGTCACATCCCTTATCTGTTGGGATCAATATCTGTTGTCAAGTTCATCTGACCGCACAATTAAGGTCTGGGCTTGCATTGAAGCAGGATCTTTGGAAGTGATATATACACACACCGAAGAAAATGGTGTTGTTTCACTTTTTGGGACGTTTATTTGCCAAGAAAGATGTGGCATTGATTGA

>Glyma15g19120.2   sequence type=CDS   gene model=Glyma15g19120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATACAAAGTTTGCACGAAGGACTGAGCGCATTGGTAGAACAACATGCTCTTATTGGAGAGCTGGAAGATGTAACAGAAATCCTTGCAGATTTTTGCACATAGAGACACCATCTCCACCTGCTGCTTGTGGTTATGGCAATACTGCATATAACTACGGAAAAAAGCCCCATTCCTCCTTTGAGAATACCCTGAAATATGGTTCAAAGAAAGCATTGCTTAGAGATTATGGAGATAGAGGAGATGCAACAAGGGTTGCTAAGGCTTTCAAGAAATCATCACCAAGGATATGTAAATACTGGATCAACAACAATTGTGTACATGGTGAACAATTCCTGTATCTGCATTCATGGTTTCGTGGTGATGGGTTTTCCACTGTAATGAAACTTCAAGAACATAAGAAGGTTATCACTGGCATCGCACTTCCTGTTGGATCCGACAAACTTTATTCTGGCAGCACTGATGGGACAGTTAGGATATGGGACTGCCATACTGGTCAATGTGCTAAAGTCATCAATCTTGGTGCTGAGGTTACCTCTTTGATCAGTGAGGGGTCATGGATTTTTGTTGGTCTGCAAAATGCTGTCAAGGCTTGGAATATCCAGACCATGTCAGAGTTTACTCTTGATGGACCCAAAGGCCGAGTCCGTGCCATGACTGTTGGCAACAATACACTCTTTGCTGGTGCAGAGGATGGTGTCATTTTTGCTTGGAGAGGAAGCTCTAAAGCCGATTCTCCTTTTGAACTGGTTGTGTCACTCACTGGCCACACTAAAGCAGTGGTTTGTCTGGCGGTTGGATGCAAGATGCTGTACTCCGGGTCCATGGACCAAAGCATAAAGGTCTGGGACATGGATACATTACAGTGTACAATGACACTAAATGATCATACTGACGTAGTCACATCCCTTATCTGTTGGGATCAATATCTGTTGTCAAGTTCATCTGACCGCACAATTAAGGTCTGGGCTTGCATTGAAGCAGGATCTTTGGAAGTGATATATACACACACCGAAGAAAATGGTGTTGTTTCACTTTTTGGGACGTTTATTTGCCAAGAAAGATGTGGCATTGATTGA

Predicted protein sequences of Glyma15g19120

Limit To All Plant Sequences

>Glyma15g19120.1   sequence type=predicted peptide   gene model=Glyma15g19120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTKFARRTERIGRTTCSYWRAGRCNRNPCRFLHIETPSPPAACGYGNTAYNYGKKPHSSFENTLKYGSKKALLRDYGDRGDATRVAKAFKKSSPRICKYWINNNCVHGEQFLYLHSWFRGDGFSTVMKLQEHKKVITGIALPVGSDKLYSGSTDGTVRIWDCHTGQCAKVINLGAEVTSLISEGSWIFVGLQNAVKAWNIQTMSEFTLDGPKGRVRAMTVGNNTLFAGAEDGVIFAWRGSSKADSPFELVVSLTGHTKAVVCLAVGCKMLYSGSMDQSIKVWDMDTLQCTMTLNDHTDVVTSLICWDQYLLSSSSDRTIKVWACIEAGSLEVIYTHTEENGVVSLFGTFICQERCGID*

>Glyma15g19120.2   sequence type=predicted peptide   gene model=Glyma15g19120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTKFARRTERIGRTTCSYWRAGRCNRNPCRFLHIETPSPPAACGYGNTAYNYGKKPHSSFENTLKYGSKKALLRDYGDRGDATRVAKAFKKSSPRICKYWINNNCVHGEQFLYLHSWFRGDGFSTVMKLQEHKKVITGIALPVGSDKLYSGSTDGTVRIWDCHTGQCAKVINLGAEVTSLISEGSWIFVGLQNAVKAWNIQTMSEFTLDGPKGRVRAMTVGNNTLFAGAEDGVIFAWRGSSKADSPFELVVSLTGHTKAVVCLAVGCKMLYSGSMDQSIKVWDMDTLQCTMTLNDHTDVVTSLICWDQYLLSSSSDRTIKVWACIEAGSLEVIYTHTEENGVVSLFGTFICQERCGID*

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