SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G19530 | AT | Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:6589176-6591070 REVERSE LENGTH=332 | SoyBase | E_val: 9.00E-98 | ISS |
| GO:0000271 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process | SoyBase | N/A | ISS |
| GO:0007389 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pattern specification process | SoyBase | N/A | ISS |
| GO:0008361 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell size | SoyBase | N/A | ISS |
| GO:0009825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth | SoyBase | N/A | ISS |
| GO:0009826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0009926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin polar transport | SoyBase | N/A | ISS |
| GO:0009932 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell tip growth | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root morphogenesis | SoyBase | N/A | ISS |
| GO:0010087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phloem or xylem histogenesis | SoyBase | N/A | ISS |
| GO:0010089 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem development | SoyBase | N/A | ISS |
| GO:0010218 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to far red light | SoyBase | N/A | ISS |
| GO:0010817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels | SoyBase | N/A | ISS |
| GO:0040007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: growth | SoyBase | N/A | ISS |
| GO:0043481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light | SoyBase | N/A | ISS |
| GO:0048759 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vessel member cell differentiation | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0010487 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: thermospermine synthase activity | SoyBase | N/A | ISS |
| GO:0016768 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: spermine synthase activity | SoyBase | N/A | ISS |
| PTHR11558 | Panther | SPERMIDINE SYNTHASE | JGI | ISS | |
| PTHR11558:SF3 | Panther | SPERMIDINE SYNTHASE | JGI | ISS | |
| PF01564 | PFAM | Spermine/spermidine synthase | JGI | ISS | |
| UniRef100_Q9S7X6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Thermospermine synthase ACAULIS5 n=3 Tax=Arabidopsis thaliana RepID=ACL5_ARATH | SoyBase | E_val: 5.00E-95 | ISS |
| UniRef100_UPI000233B8E5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B8E5 related cluster n=1 Tax=unknown RepID=UPI000233B8E5 | SoyBase | E_val: 0 | ISS |
|
Glyma15g19061 not represented in the dataset |
Glyma15g19061 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g174000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g19061.1 sequence type=CDS gene model=Glyma15g19061 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGTCATTCCTGATCAGCGCACTTATCCTTCTCTTTTTTCCCACATTTCTAAATGATAACGAGGAGTATTTTGAGTTAGATCTTGTAGAGGACTACATGACCCTTAATGCTCATGTACAAGAAGATGAAGACGAAGGTGGTGAGCAGCATAATGACCAAGTGGCTGAGGACATCAATGTGAAGCAGCATAAAGTTAATTGGTTTGAACAAGAAATTTATTCAGAAGTCAAATGGTGCCTGGCTTTAGACAGTGTGGAGTTTCGAGGGGCAAGTGAGTTCCAAAATCTGACCGTTCTTTCTACAAAACGGTTTGGAAAGGCACTCGTCATTGATGGACATTTGCAAAACACAGAATTGGACGAATACATTTACCATGAAAACTTGGTCCATCCCGCTCTGTTAACACATAATAACCCCAAAACCGTGTTTATTATGGGAGGAGGTGGAGGTTCTGCTGCAAGAGAGGTACTGAAGCACAGACACATTGAAAAAGTGATAATATGTGACATTGATAGGAACATTGCCGGTTTGATCCGCGAGCATATGACGGCAAATCATGCGGCCTTTAAAGATGAGAGGCTTCAAATTGTATACAATGATGCAAAGTATGAACTAGAGATGTCTGAAGAGAAGTTTGATGTGATCCTAGGAGATCTTCCTGAACTAGATGAATCAAATTCATCAGGTTCTAGCCATCTCTACACAAAATCCTTTTATGAGAATGTTGTCATACCTAAGCTCAAGGGCAATGGTCTCCTTGTTACTCAAGCTGGTCCCGCGGGAATTTTTACACACAAGGCTATGTTCTCACCATTATACAACACATTAAAACAAGTTTTCTCTTATGTGGTTGCATATACAGCGGTGATGCCATCCTATGGCGACTCGAATGGATGGATTATGGAGGATTACGAGTTAGATCTTTTACTGAACCTTTATGCTCCTATTCCATTACTAGAAGATGCAGATGAAGATGAAGATGAAGATGAAGGTGGTGAGCAGCATAATGACCAAGTGGCTGAGGTCACCAATGTGGAGCAGCATAAAGATAATTGGTTTGAACAAGAAATTTATTATAAAGTCATATGGTGCCTGGCTTTAGAC
>Glyma15g19061.1 sequence type=predicted peptide gene model=Glyma15g19061 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSFLISALILLFFPTFLNDNEEYFELDLVEDYMTLNAHVQEDEDEGGEQHNDQVAEDINVKQHKVNWFEQEIYSEVKWCLALDSVEFRGASEFQNLTVLSTKRFGKALVIDGHLQNTELDEYIYHENLVHPALLTHNNPKTVFIMGGGGGSAAREVLKHRHIEKVIICDIDRNIAGLIREHMTANHAAFKDERLQIVYNDAKYELEMSEEKFDVILGDLPELDESNSSGSSHLYTKSFYENVVIPKLKGNGLLVTQAGPAGIFTHKAMFSPLYNTLKQVFSYVVAYTAVMPSYGDSNGWIMEDYELDLLLNLYAPIPLLEDADEDEDEDEGGEQHNDQVAEVTNVEQHKDNWFEQEIYYKVIWCLALD
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
