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Report for Sequence Feature Glyma15g18970

Feature Type:gene_model
Chromosome:Gm15
Start:15866439
stop:15875554
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g18970
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G72830AT Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit A3 | chr1:27405699-27407088 REVERSE LENGTH=340 SoyBaseE_val: 1.00E-37ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016602GO-cc Annotation by Michelle Graham. GO Cellular Compartment: CCAAT-binding factor complex SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR12632Panther TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED JGI ISS
PTHR12632:SF5Panther TRANSCRIPTIONAL ACTIVATOR PHP2-RELATED JGI ISS
PF02045PFAM CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B JGI ISS
UniRef100_I1MHB5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHB5_SOYBN SoyBaseE_val: 3.00E-169ISS
UniRef100_I3TAV3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nuclear transcription factor Y subunit A3 n=1 Tax=Medicago truncatula RepID=I3TAV3_MEDTR SoyBaseE_val: 6.00E-118ISS

Expression Patterns of Glyma15g18970
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g18970 not represented in the dataset
Glyma15g18970 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g18970 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g173300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g18970
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g18970
>Glyma15g18970.1   sequence type=CDS   gene model=Glyma15g18970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCAATTTCTCTTTTTGAATCTTCCTGACACCGAGATCAATTGTTCACAAGTTGATTGCAATCACTCAATGGCTCATTCTTCTTATCCCTACGGCGATCCAATTCTTGCTTATGGACCACAAGCTATTAGTCATCCCCAAATGGTACCCCAGATGCTGGGACTAGCATCCACCAGAGTGGCATTACCACTTGATCTTGCTGAAGATGGACCGATTTATGTCAACGCGAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAACTTGAGGCTCAGAACAAACTTATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGATCTGGGGGTCGATTTCTGAGTACCAAACAGCTTGCACAGTCTAATGCAGAATTTGTCACCGGTGCACATTCTGGTTCTGACCCTACCAACATATATCAGAAAGAACATCCATTAGAGGTGGAAAGTCATTCCTCAAAAGATGGAGATAATGCATCATTCATAACAACCTACTCCGACCGGCCATGTTTATCTGGCAACAACCTCAATTTTCGGCAGCAGGAGTGCATGTTTCTGGGGAATTCTGCAAACATGAGTGGAGCACCACAGTGCAGTGGGGGACTCACCTTTGGCGGAGCAAAGCAACGCACTTCAGTTGTCCGGTGA
Predicted protein sequences of Glyma15g18970
>Glyma15g18970.1   sequence type=predicted peptide   gene model=Glyma15g18970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKQFLFLNLPDTEINCSQVDCNHSMAHSSYPYGDPILAYGPQAISHPQMVPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTKQLAQSNAEFVTGAHSGSDPTNIYQKEHPLEVESHSSKDGDNASFITTYSDRPCLSGNNLNFRQQECMFLGNSANMSGAPQCSGGLTFGGAKQRTSVVR*






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