Glyma15g18940 - SoyBase

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Report for Sequence Feature Glyma15g18940

Feature Type:	gene_model
Chromosome:	Gm15
Start:	15846011
stop:	15849762
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g18940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G20610	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26160.1); Has 918 Blast hits to 759 proteins in 180 species: Archae - 6; Bacteria - 105; Metazoa - 264; Fungi - 89; Plants - 167; Viruses - 5; Other Eukaryotes - 282 (source: NCBI BLink). \| chr5:6969184-6972794 FORWARD LENGTH=1164	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF01476	PFAM	LysM domain	JGI		ISS
UniRef100_UPI000233B78D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B78D related cluster n=1 Tax=unknown RepID=UPI000233B78D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g18940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g18940

Paralog	Evidence	Comments
Glyma09g07760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g18940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g173100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g18940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g18940

Limit To All Plant Sequences

>Glyma15g18940.1   sequence type=CDS   gene model=Glyma15g18940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTTGTCGAGAATGGAGGCTGGGAAGAAGGGTGGTGGGGGTTCTAGTAACCAGAAGAAATTGTTAAAGGATGTTGAAACCATGAACAAAGCTTTGTACTTGGATAGAACCTCTTCAAGGAGTTCAATACCTAGTGCAAATTCTAGATCTAAATTCACAGGGAAACCTCAGTTGCCTGATCCCAAATCCAAGTCTAAAGCCAGTGGTGATAATAATAGTGAGAATGTTCAGAAGGATAAGAAGTCCATATGGAATTGGAGGCCACTAAGGGCACTCTCGCACATCCGAAATAAGAGGTTCAATTGTAGTTTTTATCTCCAAGTTCATTTGATTGAGGGGTTGCCTCCGAGTTTTGATGATGCTAGCCTTGCTGTGTACTGGAAGAGGCGCGATGGGGTTCTTGTGACCCAGCCGGCCAAGGTGGTTCAGCGTGTGGCTGAATTTGAGGAGAAGTTGACCTACACTTGCTCGGTGTATGGAAGCAGGAGCGGACCTCACCATTCTGCAAAGTATGAAGCAAAGCATTTTTTGCTCTATGCTTCACTTCTCAGTGTGCCAGAGATGGATTTGGGGAAGCACCGGGTGGATCTGACGAGGTTGCTTCCTCTCACTCTGGAGGAGCTTGAGGAGGAGAAGAGCTCGGGGAAGTGGACTACTAGTTTTCGATTAACGGGAGTGGCTAAGGGTGCTGCGATGAATGTCAGTTTTGGGTATACGGTGGTTGGTGATAATGCTAGTGCTACCAGAGACAGCCTTCCTAAAGCATTGACCTCCAGGCAGCATAGTTTTGCTCCGACTCCGACAAAGTTAGATGTTAAACCCAGACAGTTTGATGGAAGCAGCAAGATGAGACGGGCCACAAGTTTGCAATACTCATCTCAAGCTGCAGATGAGGTGAAGGATCTTCATGAGGTATTGCCATTAACTAAGTCAGCACTAGCCAGCTCAATAGACGTCTTATATACAAAATTGGATGAAGAAAAGGCTTGTATGGATGACAAACCTGAACCCTACGTATTTCAAGAAAAGCTGGAGACAGTTAAACCAGATGGCTATTCTTTACCAGATTTTGAAAATGAAAACCCCGAACATTGTCTTGATAATGATTTTTTTGTTGTTGATAAGGGCATAGAACTTTCATCAAACGAATCTGTTAAACTAGAGGAATCCATCATAAAGGCTCCTGACGATGCTTCTACAGTTGATAGTGCCAGTACCCTTGGTATATCAGGTATACAAATATCTTCTGAAGATAGTGTTAAGCATGATTTTCTGGATGATGCAAATGATAGTTCTAAGGATCAAGCAGTGGTAGAGGAATTTGCTAGCATAAAGGCTCCTGAGGATGCTTCTACAGTTGATGCTTCCTGTACCCTTGGTATATCAGGTATACATGTATCTTCTGAAGATAGTGTTAAACACGATTTTCTGGATGAGGCAAATGGCTTGGACACTAATGAGCTGCTCATGCAAGAACTAGAATCTGCTTTAAATAGTCATACTGTTGCCACTGAATTTTTAAGCATGTTAGGCTTAGACCATAGTCAAATGGGCTTGAGTTCTGAAAGCGAGCCCGAGTCTCCAAGAGAGCTACTTTTAAGACAATTTGAGAAGGAGGCTCTGAATGGGGGCTTCTCTTCTTTGTTCGATTTTGACATGAACTATGATAATGAAGCAGATGGTGGCTATGATGCTTCTGCTGCTTCTGAGCAGTGGAACTTTTCTGAAGGTGTCAAGTCGTCATCCTTCTTGCAAGATGATCTGCAGGAGGAGCATCCAGTTGAGTCTCAGGATGTGAGGAGCAAACAGAGGGCTCAAATGCTAGAAGACTTGGAAACAGAAGCCTTGATGCGTGAATGGGGTTTGAATGAGAAGGCTTTTCATCATTCTCCACCAAAAGATTTTGCCGGTTTTGGAAGTCCAATTCATTTACCACCTGAAGAGCCTCCCACATTGCCTCCACTTGATGATGGGTTGGGCCCTTTTCTTCAGACAAAAGACGGGGGTTTTCTACGCTCTATGAATCCCTCAATTTTCAAGAATTCTAAAAGTGGTGGGAGCTTAATCATGCAGGTATCCAACCCTGTTGTGGTACCTGCAGAAATGGGTTCTGGGATAATGGAGGTTTTGCAGTGTTTGGCTTCAGTGGGTATTGAAAAGCTCTCAATGCAGGCAAAGGAGTTAATGCCACTGGAAGATATCACAGGGAAGACAATGCAACAAATAGCATGGGAAGCTATGCCTGTCTTAGAGGGTGCGGAGAGGCAATGCCATTTGCAGCATGATCCAATAGCATGGCCAGACAGTGCTTATGTGCAAAGGGACTTGAAAGGAATGCCATCTAAACAAAAGTCTGGCAAGTTTAGTTCAAGAACAGTGGCCAACCAAACAGGCTCAGAGTTTGTTTCAGTAGAAGACCTTGCTCCATTGGCTATGGATAAAATTGAAGCACTTTCAATGGAGGGTTTGAGAATCCAATCTGGGATGTCAGAAGAGGAAGCACCGTCAAACATCATTGCTCAGTCCATTGGAGATATTTCAGCTCTCCAAGGCAAGGGGGTTGATGTTAGTGGGTCCCTTGGCCTGGATGGAGCTGCTGGTTTGCAGTTGATGGATGTAAAGGACAGTGATGATGGTGGTGATGGTGTTGATGGGATAATGAGCCTATCATTAACTCTTGATGAATGGATGAAGCTGGATTCTGGTGAGATTGATGATATAGATAATATCAGTGAGCACACTTCCAAACTTCTTGCAGCCCATCATGCCAACTCTTTTGACTTCATTCGTGGGAGTTCAAAGGGAGAGAAGAGACGAGGCAAAAGCAGAAGATGTGGTTTGCTAGGAAACAATTTCACAGTAGCATTAATGGTGCAACTCCGTGATCCTCTGAGAAACTATGAGCCGGTTGGAACACCAATGCTTGCTCTTATACAAGTTGAGAGAGAGTTCATGCTTCCAAAGCAAAGAATTTTCGACAGTGTGTCTGAGATTAGGAAAAACTATGATGAGGATGACGAGAGCGAAATAGTAGCAAAGGTGGAAATGAAGGACACTGAGAAAGAGGAGAAAAGTTCTGAGGAGGACGAGGGCATTCCTCAGTTCAGAATCACTGAAGTCCATGTGGCAGGTCTAAAGCCTGAGCCTCAGAAAAAGAAGCTCTGGGGCACTTCAAGCCAGCAACAGTCTGGTTCTCGCTGGTTGCTCGCTAATGGAATGGGGAAGAGCAATAATAAGCTTTCACTAATGAAGTCAAAGGCTGCATCAAAATCTAATGCTCCAGTTACCACAAAGGGGCAACCTGGTGGTGACTCCTTGTGGAGCATATCATCTCGTATTGATGGCGCTCGAGGAAAATGGAAGGAGTTGGCAGCACTAAATCCACATATAAGAAACCCCAATGTCATTATACCAAATTGA

Predicted protein sequences of Glyma15g18940

Limit To All Plant Sequences

>Glyma15g18940.1   sequence type=predicted peptide   gene model=Glyma15g18940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMLSRMEAGKKGGGGSSNQKKLLKDVETMNKALYLDRTSSRSSIPSANSRSKFTGKPQLPDPKSKSKASGDNNSENVQKDKKSIWNWRPLRALSHIRNKRFNCSFYLQVHLIEGLPPSFDDASLAVYWKRRDGVLVTQPAKVVQRVAEFEEKLTYTCSVYGSRSGPHHSAKYEAKHFLLYASLLSVPEMDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLTGVAKGAAMNVSFGYTVVGDNASATRDSLPKALTSRQHSFAPTPTKLDVKPRQFDGSSKMRRATSLQYSSQAADEVKDLHEVLPLTKSALASSIDVLYTKLDEEKACMDDKPEPYVFQEKLETVKPDGYSLPDFENENPEHCLDNDFFVVDKGIELSSNESVKLEESIIKAPDDASTVDSASTLGISGIQISSEDSVKHDFLDDANDSSKDQAVVEEFASIKAPEDASTVDASCTLGISGIHVSSEDSVKHDFLDEANGLDTNELLMQELESALNSHTVATEFLSMLGLDHSQMGLSSESEPESPRELLLRQFEKEALNGGFSSLFDFDMNYDNEADGGYDASAASEQWNFSEGVKSSSFLQDDLQEEHPVESQDVRSKQRAQMLEDLETEALMREWGLNEKAFHHSPPKDFAGFGSPIHLPPEEPPTLPPLDDGLGPFLQTKDGGFLRSMNPSIFKNSKSGGSLIMQVSNPVVVPAEMGSGIMEVLQCLASVGIEKLSMQAKELMPLEDITGKTMQQIAWEAMPVLEGAERQCHLQHDPIAWPDSAYVQRDLKGMPSKQKSGKFSSRTVANQTGSEFVSVEDLAPLAMDKIEALSMEGLRIQSGMSEEEAPSNIIAQSIGDISALQGKGVDVSGSLGLDGAAGLQLMDVKDSDDGGDGVDGIMSLSLTLDEWMKLDSGEIDDIDNISEHTSKLLAAHHANSFDFIRGSSKGEKRRGKSRRCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVEREFMLPKQRIFDSVSEIRKNYDEDDESEIVAKVEMKDTEKEEKSSEEDEGIPQFRITEVHVAGLKPEPQKKKLWGTSSQQQSGSRWLLANGMGKSNNKLSLMKSKAASKSNAPVTTKGQPGGDSLWSISSRIDGARGKWKELAALNPHIRNPNVIIPN*

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