Glyma15g18930 - SoyBase

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Report for Sequence Feature Glyma15g18930

Feature Type:	gene_model
Chromosome:	Gm15
Start:	15827989
stop:	15832451
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g18930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G35460	AT	Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2838 (InterPro:IPR021261); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:13672598-13674546 FORWARD LENGTH=381	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2895	KOG	Uncharacterized conserved protein	JGI		ISS
PF10998	PFAM	Protein of unknown function (DUF2838)	JGI		ISS
UniRef100_I1MHB2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHB2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9FJB4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g35460/MOK9_4 n=1 Tax=Arabidopsis thaliana RepID=Q9FJB4_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g18930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g18930

Paralog	Evidence	Comments
Glyma09g07730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g18930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g173000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g18930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g18930

Limit To All Plant Sequences

>Glyma15g18930.1   sequence type=CDS   gene model=Glyma15g18930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGATCACGAAGACCATGCAGACTACGCAGACAATGAATCCTTTGCAAAGCGTAGGTTCAGGGATAGGTCCAAGGAGGCATTGTCCAAACAAGCCGTTAAGTTAGCCAAACAAGCTGAAGAGCATGAAAGGTTCATCAACAAGGTGACTCATCTTTTGGGGGTTCTTGGCTTTGGTTGGTTTTGCTTCATCTTTGGGGCAAGGCCACAAGCCGTTCCCTTGGTATATTGTTTGTTCTATGTGGTATTTGTTCCTCTCCGTTGGATATATTACAGGTTCAAGAAATGGCATTACTATCTCCTGGATTTTTGCTATTATGCCAATACAATCTTCTTGGTTTACCTCCTTTTCTACCCAAGCAATGAAAAGCTTTTCCTGGTTTGCTTTTCATTTGCTGAGGGGCCATTAGCGTGGGCTTTAATTGTTTGGCGCTGTAGCTTAGTTTTCAGTTCGGTTGACAAGATTGTCAGTGTTCTTATCCATCTTTTGCCTGGATTGGTTTTCTTTACCATTCGATGGTGGAATCCTGCAACCTTTGAAGCCTTGCGACCAGTGGGAACAGCTAGAAGATCTACATGGCCTTACATCGAAGATAAATCCTATCTCTGGATGTGGCTGTTTCTGGTTCCCTTAGCAGTTTATATTCTCTGGCAGGTTCTATACTTCCTCATTGTTAACGTCTTGCGCCGACAACGGTTTTTAAGAGATCCTGAAGTCATGACTTCCTACAGGGAACTCTCCAAAAAAGCTCAGAAAGCAAACAATATTTGGTGGCGTTTAAGCGGCTTACTTGGGGATCAAAATCGCTTGTTAATGTACATTGTGCTTCAAGGCATATTCACTGTGGCAACCACTGCTCTGACTGTTCCCATATTCTTGTCATATGAATTGTCTGTAGTCTTCCAATTGCTGAAGATTTCTGCGTCGGTGTGGAATGGGGGAAGTTTCCTAATAGATGTGATGCCTAGGCAGGTAATTCTCAAGGAGAAAAAGAAATCAGAGATGCAACCTGTTCAAAATAAAAAAGATCAGTGA

Predicted protein sequences of Glyma15g18930

Limit To All Plant Sequences

>Glyma15g18930.1   sequence type=predicted peptide   gene model=Glyma15g18930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDHEDHADYADNESFAKRRFRDRSKEALSKQAVKLAKQAEEHERFINKVTHLLGVLGFGWFCFIFGARPQAVPLVYCLFYVVFVPLRWIYYRFKKWHYYLLDFCYYANTIFLVYLLFYPSNEKLFLVCFSFAEGPLAWALIVWRCSLVFSSVDKIVSVLIHLLPGLVFFTIRWWNPATFEALRPVGTARRSTWPYIEDKSYLWMWLFLVPLAVYILWQVLYFLIVNVLRRQRFLRDPEVMTSYRELSKKAQKANNIWWRLSGLLGDQNRLLMYIVLQGIFTVATTALTVPIFLSYELSVVFQLLKISASVWNGGSFLIDVMPRQVILKEKKKSEMQPVQNKKDQ*

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