Glyma15g18800 - SoyBase

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Report for Sequence Feature Glyma15g18800

Feature Type:	gene_model
Chromosome:	Gm15
Start:	15684198
stop:	15686003
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g18800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26100	AT	Annotation by Michelle Graham. TAIR10: casein kinase 1 \| chr4:13227885-13230508 REVERSE LENGTH=450	SoyBase	E_val: 3.00E-61	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
PTHR11909	Panther	CASEIN KINASE-RELATED	JGI		ISS
PTHR11909:SF18	Panther	CASEIN KINASE	JGI		ISS
UniRef100_G7IS37	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Casein kinase I isoform delta-like protein n=1 Tax=Medicago truncatula RepID=G7IS37_MEDTR	SoyBase	E_val: 8.00E-60	ISS
UniRef100_UPI00023389B9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023389B9 related cluster n=1 Tax=unknown RepID=UPI00023389B9	SoyBase	E_val: 2.00E-60	ISS

Expression Patterns of Glyma15g18800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g18800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma15g18800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g18800

Limit To All Plant Sequences

>Glyma15g18800.1   sequence type=CDS   gene model=Glyma15g18800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAAGATATAGGGACCCTAACACAAACAAACATATTCCTAACATTGGTACTTTTTTTCTTCTTTCTTCATTTTTCTTGTTCAAAATTTGTATGGTTAAAATTTGGTAATCATTTTTACATCAAGCGAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAAGGTATATCATTGACTTTGGCCTTGCTAAGAAATATAAAGACACCACTACACATCAGCATATTCCTTACAGCAGCTTCAAAATTTATAACAAGAATTTGACTGGAACGGCTAGGTATGCTAGTATGAATACTCATCTAGGAATTGTCACTTGGATACATTCTTATGTACTTTTTAAGAGGAAGTTCTACCATCTAACTTGGCAGGGATTGAAAGTCGATACTAAGAAGAAGAAGTATGAGGAGATTAGTGAGAAGAAAGATTTTACTTCTATTAAGTCTCTTCGTCGTGGCTATCCCTCAAAACTTGCTTCATACTTTCATTATTGTCGATCACTGAGGTTTGATGATAAACCAAAATATGCTTATTTGAAAAGACATTTCTGTTTAGTAGTTTCAACATCGATTCAAAACTGA

Predicted protein sequences of Glyma15g18800

Limit To All Plant Sequences

>Glyma15g18800.1   sequence type=predicted peptide   gene model=Glyma15g18800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
QKDIGTLTQTNIFLTLVLFFFFLHFSCSKFVWLKFGNHFYIKRDNFLMGLGRRANQRYIIDFGLAKKYKDTTTHQHIPYSSFKIYNKNLTGTARYASMNTHLGIVTWIHSYVLFKRKFYHLTWQGLKVDTKKKKYEEISEKKDFTSIKSLRRGYPSKLASYFHYCRSLRFDDKPKYAYLKRHFCLVVSTSIQN*

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