Glyma15g18721 - SoyBase

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Report for Sequence Feature Glyma15g18721

Feature Type:	gene_model
Chromosome:	Gm15
Start:	15622762
stop:	15624940
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g18721

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G20560	AT	Annotation by Michelle Graham. TAIR10: DNAJ heat shock family protein \| chr2:8848353-8849815 REVERSE LENGTH=337	SoyBase	E_val: 9.00E-92	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
PTHR24077	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24077:SF89	Panther		JGI		ISS
PF01556	PFAM	DnaJ C terminal region	JGI		ISS
UniRef100_A2Q505	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DnaJ homolog subfamily B member n=1 Tax=Medicago truncatula RepID=A2Q505_MEDTR	SoyBase	E_val: 4.00E-99	ISS
UniRef100_UPI000233B781	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B781 related cluster n=1 Tax=unknown RepID=UPI000233B781	SoyBase	E_val: 4.00E-126	ISS

Expression Patterns of Glyma15g18721

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g18721 not represented in the dataset	Glyma15g18721 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g18721 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma15g18721

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g18721

Limit To All Plant Sequences

>Glyma15g18721.2   sequence type=transcript   gene model=Glyma15g18721   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGATAGAAAAAATTTGGAAGAAGAAACTAGGAAGGCTTGGAAAGTGGTATGGGGTGCTATGGTCTCTATGGTGCCACAGGATTAAGATAGTTGTTAATGAGGAGAGTTTGGACTTTGATGCAGTGGTTGAAATTATAAGGTATAGAGCTTGTGCGTGGATTTCAGCAAAATGGAAGAATGCTTCATTTTTGTTCTACGAATGATGTCACCTTAAAGGGCAAGTGAGCAATGATGAATACGGAGAAGAAGGGCTTAAAGGGCAAGTGCCACCTCCAGATGCCGGTGGCCATACATTCTTCCAAACTGGAGATGGCCCAACAACGTTCAGGTTCAATCCAAGAAACGCAGATGACATTTTTGCCGAGTTTTTCGGGTTCTCAAGCCCGTTTGGTGGTGGTGGCTGCGGCAATGGCATGAGGGGTGGTTCCTTCAGTGGAATTTTTGGTGATTTGGAGAAGGAAGGACCATGAGTCAGCAAGGTCCACGCAAGCCACATCCCATCGAAAAGACATTGCCTTGCACCCTTGAGGAACTCTATAAGGGCACTGCGAAAAAAATGAAGATCTCTAGGGAAATTGCTGATGCTAGCGGGAAAACTTTGCCGGTGGAAGAAATCTTGACCATTGACATTAAACCCGGGTGTAAAAAGGGGACAAAGATCACATTCCCTGAAAAAGGAAATGAGCAGCCAAATGTTATTGCTTCGGATCTTGTGTTTGTCATTGACGAGAAACCCCACCCTGTGTTTACCAGAGATGGTAATGATTTGGTTGTGACACAAAAGGTGTCACTTGAGGAAGCTCTAACGGGCTATATTATCCATCTTACAACACTTGATGGCAGGGTTCTCAAAATTCCCATAAACAATGTTATTCATCCAACCTATGAAGAGGTGGTCCCCAGAGAAGGTATGCCAATTCCAAAAGACCCTTTGAAGAGAGGTAATCTTAGGATCAAATTCCCAGCAAAGTTGAAGTCAGAGCAGCAAGCCGGATTTAAGAAACTTTTGCCGCATTGAACTGTATCTTGTTGTGTATAGGCTTCCAATTTGCTCTCATTCTTCTCTGTCTCCTCTTTTATTTTAGGTGGCTTTCGTTTGTGTAGTTTGCGTGTAATATGTTTAGTGTTGGGAGAGGCAATGGTTGAAAAACGGTTGATTTTGATGGTATACTTAAAGTTGTGTTAGCATGTGTTGATAGTTAAACTTTGGACGTAATAGCTATGTGATTCT

Coding sequences of Glyma15g18721

Limit To All Plant Sequences

>Glyma15g18721.1   sequence type=CDS   gene model=Glyma15g18721   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCAGCAAGGTCCACGCAAGCCACATCCCATCGAAAAGACATTGCCTTGCACCCTTGAGGAACTCTATAAGGGCACTGCGAAAAAAATGAAGATCTCTAGGGAAATTGCTGATGCTAGCGGGAAAACTTTGCCGGTGGAAGAAATCTTGACCATTGACATTAAACCCGGGTGTAAAAAGGGGACAAAGATCACATTCCCTGAAAAAGGAAATGAGCAGCCAAATGTTATTGCTTCGGATCTTGTGTTTGTCATTGACGAGAAACCCCACCCTGTGTTTACCAGAGATGGTAATGATTTGGTTGTGACACAAAAGGTGTCACTTGAGGAAGCTCTAACGGGCTATATTATCCATCTTACAACACTTGATGGCAGGGTTCTCAAAATTCCCATAAACAATGTTATTCATCCAACCTATGAAGAGGTGGTCCCCAGAGAAGGTATGCCAATTCCAAAAGACCCTTTGAAGAGAGGTAATCTTAGGATCAAATTCCCAGCAAAGTTGAAGTCAGAGCAGCAAGCCGGATTTAAGAAACTTTTGCCGCATTGA

>Glyma15g18721.2   sequence type=CDS   gene model=Glyma15g18721   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCAGCAAGGTCCACGCAAGCCACATCCCATCGAAAAGACATTGCCTTGCACCCTTGAGGAACTCTATAAGGGCACTGCGAAAAAAATGAAGATCTCTAGGGAAATTGCTGATGCTAGCGGGAAAACTTTGCCGGTGGAAGAAATCTTGACCATTGACATTAAACCCGGGTGTAAAAAGGGGACAAAGATCACATTCCCTGAAAAAGGAAATGAGCAGCCAAATGTTATTGCTTCGGATCTTGTGTTTGTCATTGACGAGAAACCCCACCCTGTGTTTACCAGAGATGGTAATGATTTGGTTGTGACACAAAAGGTGTCACTTGAGGAAGCTCTAACGGGCTATATTATCCATCTTACAACACTTGATGGCAGGGTTCTCAAAATTCCCATAAACAATGTTATTCATCCAACCTATGAAGAGGTGGTCCCCAGAGAAGGTATGCCAATTCCAAAAGACCCTTTGAAGAGAGGTAATCTTAGGATCAAATTCCCAGCAAAGTTGAAGTCAGAGCAGCAAGCCGGATTTAAGAAACTTTTGCCGCATTGA

Predicted protein sequences of Glyma15g18721

Limit To All Plant Sequences

>Glyma15g18721.1   sequence type=predicted peptide   gene model=Glyma15g18721   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQQGPRKPHPIEKTLPCTLEELYKGTAKKMKISREIADASGKTLPVEEILTIDIKPGCKKGTKITFPEKGNEQPNVIASDLVFVIDEKPHPVFTRDGNDLVVTQKVSLEEALTGYIIHLTTLDGRVLKIPINNVIHPTYEEVVPREGMPIPKDPLKRGNLRIKFPAKLKSEQQAGFKKLLPH*

>Glyma15g18721.2   sequence type=predicted peptide   gene model=Glyma15g18721   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQQGPRKPHPIEKTLPCTLEELYKGTAKKMKISREIADASGKTLPVEEILTIDIKPGCKKGTKITFPEKGNEQPNVIASDLVFVIDEKPHPVFTRDGNDLVVTQKVSLEEALTGYIIHLTTLDGRVLKIPINNVIHPTYEEVVPREGMPIPKDPLKRGNLRIKFPAKLKSEQQAGFKKLLPH*

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