Glyma15g18665 - SoyBase

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Report for Sequence Feature Glyma15g18665

Feature Type:	gene_model
Chromosome:	Gm15
Start:	15594575
stop:	15597264
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g18665

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G03250	AT	Annotation by Michelle Graham. TAIR10: UDP-GLUCOSE PYROPHOSPHORYLASE 1 \| chr3:749761-754014 REVERSE LENGTH=469	SoyBase	E_val: 4.00E-89	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0005985	GO-bp	Annotation by Michelle Graham. GO Biological Process: sucrose metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0052543	GO-bp	Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0090406	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: pollen tube	SoyBase	N/A	ISS
GO:0003983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UTP:glucose-1-phosphate uridylyltransferase activity	SoyBase	N/A	ISS
GO:0016779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity	SoyBase	N/A	ISS
PTHR11952	Panther	UDP- GLUCOSE PYROPHOSPHORYLASE	JGI		ISS
PTHR11952:SF1	Panther	UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE	JGI		ISS
PF01704	PFAM	UTP--glucose-1-phosphate uridylyltransferase	JGI		ISS
UniRef100_Q8W557	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucose pyrophosphorylase n=1 Tax=Amorpha fruticosa RepID=Q8W557_9FABA	SoyBase	E_val: 2.00E-92	ISS
UniRef100_UPI000233B780	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B780 related cluster n=1 Tax=unknown RepID=UPI000233B780	SoyBase	E_val: 4.00E-125	ISS

Expression Patterns of Glyma15g18665

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g18665 not represented in the dataset	Glyma15g18665 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g18665 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma15g18665

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g18665

Limit To All Plant Sequences

>Glyma15g18665.1   sequence type=CDS   gene model=Glyma15g18665   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTCGCTCCCAAGACATTGGCTGACGTGAAAGGTGGCACTGTGATTTCTTACAAAGGAAGGGTTCAGGCTTTGACATTTAGCTTTGATTGTTTGATGCAACTCTTTGAAATTGCCCAAGTCTCAGATGAACATGTCAGTGAAATTAAGTCTATAAAGAAATTCAAAATTTTCAACACAAATAATTTGTGGGTAAACTTAGAAGCAATTAAAAGTCTTGTTGAAGCTGATGATGCTCTGAAGATGGAAATTATTCCCAATCCAGAGATATTGCTTATATCTATTGGAATTAATGTGCCTCGATCTCGCTTCCTTCCCGTGAAAGCAACTTCAAACTTACTTTTTGTCCAGTCGTACCTTTACACTTTACAAGATGGATTGGTTATTAGGAACCAAGCTAGGGCAAATCCTAAAAATCCTTCCATTGAATTGGGGCCAGAATATAAGAAGGTTAAGATTAGCAACTTCTTGAGCCGATTCAAGTCAATCCCCAGTATTGTTGAGCTTGACGGTCTAAAAGTGGCAGGCGATGTATGGTTGGGAGCTGGGAAAAACAAGTTTCTTGCAAAACTTGTTGTGAAGCTGGAAATACCTCACGGAGCTGTGATCAAAGACAAGGAAATTAATGGCCCTAAGGACCTATGA

Predicted protein sequences of Glyma15g18665

Limit To All Plant Sequences

>Glyma15g18665.1   sequence type=predicted peptide   gene model=Glyma15g18665   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVAPKTLADVKGGTVISYKGRVQALTFSFDCLMQLFEIAQVSDEHVSEIKSIKKFKIFNTNNLWVNLEAIKSLVEADDALKMEIIPNPEILLISIGINVPRSRFLPVKATSNLLFVQSYLYTLQDGLVIRNQARANPKNPSIELGPEYKKVKISNFLSRFKSIPSIVELDGLKVAGDVWLGAGKNKFLAKLVVKLEIPHGAVIKDKEINGPKDL*

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