SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G33050 | AT | Annotation by Michelle Graham. TAIR10: calmodulin-binding family protein | chr4:15944604-15946736 REVERSE LENGTH=488 | SoyBase | E_val: 0 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0002237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin | SoyBase | N/A | ISS |
| GO:0002679 | GO-bp | Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response | SoyBase | N/A | ISS |
| GO:0006569 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009581 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detection of external stimulus | SoyBase | N/A | ISS |
| GO:0009595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus | SoyBase | N/A | ISS |
| GO:0009625 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to insect | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009646 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to absence of light | SoyBase | N/A | ISS |
| GO:0009684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010119 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement | SoyBase | N/A | ISS |
| GO:0010197 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polar nucleus fusion | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0031347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0043900 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process | SoyBase | N/A | ISS |
| GO:0045087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: innate immune response | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| UniRef100_G7IQ65 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-binding protein n=1 Tax=Medicago truncatula RepID=G7IQ65_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MH91 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MH91_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma15g18640 not represented in the dataset |
Glyma15g18640 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g07470 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g171000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g18640.1 sequence type=CDS gene model=Glyma15g18640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGATCATCACTTTCGTTACTCTCATCAGCCTGGGAAGAAATCGTTAGGCATTCACTCTTTGGTCTGTCTTTGAACTTCACTTTTGGTTCCAAAGATGGGGCTGTGATTTTGAGATCAGGCAGCTTCAAGAAAAGAGAATCAGAAACTACTTCAAAGGGTACCTCTACTACCAACAGTTCAAGCAAGTTGAAAGATTGCAGGCCCGAACACATGGTCCTCGAAAGAAACCTTTCGTGCATTAAAGATATGGAGATCATGGGATCAGACAGAAGTGAACAATTACAGCACAAGCCTGTGCCTGTTCTTTCTCTGCCTAAAGAAGTCGTTTTCTCTTCGCCAAGACCGGTTAGTGAGCTTGATGCTGCCGCAACTAAACTTCAAAAAGTGTACAAGAGTTACCGCACTAGAAGAAACCTTGCAGATTGTGCTGTTGTGGTGGAAGAGCTCTGGTGGAAGGCATTAGACTTTGCTGCTCTTAAACGGAGCTCTGTTTCATTCTTTGATGTGGAGAAACAAGAAACCGCCGTGTCACGGTGGGCAAGAGCAAGGACAAGAGCAGCTAAGGTTGGAAAAGGTTTGTCCAAGGATGATAAGGCTCAAAAATTAGCCCTCCAACATTGGCTAGAAGCTATTGACCCACGTCATCGCTATGGACACAATTTGCACATGTATTACGATATTTGGTTTGAGAGCCAAAGCACCCAACCATTTTTCTACTGGTTGGATGTTGGAGATGGTAAAGAAATAAATCTTGAGAAATGCCCAAGATCCATCCTACAACGCCAGTGCATTAAATATCTTGGACCAAAAGAAAGGGAAGAGTATGAAGTAATTGTTGAAAAAGGGAAGCTGGTGTACAAACAAGATGGGAGGCTTGTGGATACTGACGGAAAGTCCAAATGGATATTTGTTCTTAGCACCACAAGGTCCTTGTATGTGGGGCGCAAGCAGAAAGGTGCATTTCAACACTCTAGCTTTCTAGCTGGGGCTGCTACAACAGCTGCAGGAAGATTAGTGGCTCAACAAGGTGTACTTGAGGCTATTTGGCCATATAGTGGTCACTATCACCCTACAGAAGAGAACTTTAAAGAATTCATAAGCTTTCTTGACGAGCACAATGTGGATCTTTCTAATGTCAAGAAATGTGCCATAGATGACGATGCTCCTTCAATTGTTGGGTCCAATTCATTTATTGACATTAATGAATCACAACAAATTAATAAGGGTCCTACTCTTTCTTCTTCCAATTATGTCAACAACAATAGTGTCACTATTAATGCAGCAATTAACAAAGAGATTGAAAAGAAGGTGGTCGCTCCAGTTCTTGACGTGCCCAAGAGGCTAACATGCAAGTGGTCTACTGGGGCTGGGCCCAGGATTGGGTGTGTGCGTGACTACCCTGGACACCTTCAAACAAGGGCCTTGGAGCAAGTTAACCTATCTCCAAGGCCTGCTTCTGCACGCCCATATAGTTATGGTCCAATTCCTTCTCCAAGGCCCAGTCCAAAAGTTAGGATGTCTCCAAGGCTTGCTTACATGGGCTTGCCCAGCCCAAGGATCTCAATTCCTGCTGCAAGTTAA
>Glyma15g18640.1 sequence type=predicted peptide gene model=Glyma15g18640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSSLSLLSSAWEEIVRHSLFGLSLNFTFGSKDGAVILRSGSFKKRESETTSKGTSTTNSSSKLKDCRPEHMVLERNLSCIKDMEIMGSDRSEQLQHKPVPVLSLPKEVVFSSPRPVSELDAAATKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFDVEKQETAVSRWARARTRAAKVGKGLSKDDKAQKLALQHWLEAIDPRHRYGHNLHMYYDIWFESQSTQPFFYWLDVGDGKEINLEKCPRSILQRQCIKYLGPKEREEYEVIVEKGKLVYKQDGRLVDTDGKSKWIFVLSTTRSLYVGRKQKGAFQHSSFLAGAATTAAGRLVAQQGVLEAIWPYSGHYHPTEENFKEFISFLDEHNVDLSNVKKCAIDDDAPSIVGSNSFIDINESQQINKGPTLSSSNYVNNNSVTINAAINKEIEKKVVAPVLDVPKRLTCKWSTGAGPRIGCVRDYPGHLQTRALEQVNLSPRPASARPYSYGPIPSPRPSPKVRMSPRLAYMGLPSPRISIPAAS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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