Glyma15g18600 - SoyBase

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Report for Sequence Feature Glyma15g18600

Feature Type:	gene_model
Chromosome:	Gm15
Start:	15483995
stop:	15487579
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g18600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G19480	AT	Annotation by Michelle Graham. TAIR10: nucleosome assembly protein 1;2 \| chr2:8438601-8441040 FORWARD LENGTH=372	SoyBase	E_val: 1.00E-153	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0006334	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleosome assembly	SoyBase	N/A	ISS
GO:0009294	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
KOG1507	KOG	Nucleosome assembly protein NAP-1	JGI		ISS
PTHR11875	Panther	NUCLEOSOME ASSEMBLY PROTEIN	JGI		ISS
PTHR11875:SF7	Panther	SE20-4	JGI		ISS
PF00956	PFAM	Nucleosome assembly protein (NAP)	JGI		ISS
UniRef100_I1MH86	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MH86_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q39892	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleosome assembly protein 1 n=1 Tax=Glycine max RepID=Q39892_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g18600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g18600

Paralog	Evidence	Comments
Glyma09g07410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g18600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g170700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g18600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g18600

Limit To All Plant Sequences

>Glyma15g18600.2   sequence type=transcript   gene model=Glyma15g18600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATAAATATTAAAAGATAAATAAAGGGAACGGAATGCTTTGGCTTAAAAGGAGGGAGAGGAGAAAAAAGATTGGATTTAGACGCCATTGTCAAACCCTTTTCACTTCTCTCTAGGGTTTTAGCACTCTCTCTCTCTCTCGTTTTCGTTCTTCCTTTCTGCCTCTCTCAGTCACACACCTTCTCGATGACCAACGACAACATCGCCGTGACAGATCTCACTTCTGCCCTCAATGAAGAGAATCGCGCCGACCTAGTCAATGCTCTCAAGAGCAAGATTCAGAGTCTGGCTGGGGCGCATTCTGATGTTCTAGAGACTCTATCCCCGAATGTCAGGAAGCGTGTTGAATCTCTTAGAGAAATTCAGGGTAAACATGATGAACTAGAGGCAGACTTCTTGAAGGAGAGAGAAGCTCTTGAAGCAAAGTACCAAAAACTGTATCAGCCATTGTACACAAAGCGCTATGAAATTGTAAATGGTGTTACTGAAGTGGAAGGGGCAGCAAATGAATCAACAGATGAATCAGAAGAGAATAAAGAGAAAGGAGTGCCTTCTTTTTGGCTCAATGCAATGAAAAATAATGATGTGTTAGCTGAAGAGATTTCAGAGCGTGATGAAGGTGCTCTCAAGTTTCTTAAAGATATCAAGTGGAGCAGGATAGAAAATCCTAAAGGGTTCAAGCTTGATTTCTTCTTTGATACCAATCCTTACTTTTCAAATACCGTCTTGACAAAAACATATCATATGATTGATGAGGATGAACCTATATTGGAGAAAGCAATTGGGACGGAAATTGAATGGTACCCGGGAAAATGCTTGACTCAGAAGGTTTTGAAGAAGAAGCCTAAGAAGGGTTCAAAGAATGCTAAACCAATTACCAAAACTGAAAGCTGTGAAAGCTTCTTCAATTTTTTCAAACCACCAGAAGTCCCTGAAGATGATGCTGACATTGATGAAGATTTGGCTGAAGAACTTCAGAATCAGATGGAACAAGATTATGACATTGGGTCAACATTAAGAGATAAAATTATCCCTCATGCTGTATCATGGTTTACTGGGGAGGCCGCTCAGGGAGATGAGTTTGAAGACCTGGAGGATGATGAGGACGAAGAGGAAGATGAGGACGAAGATGAGGACGAAGAGGATGACGAGGACGAAGACGATGAAGAGGAGGATGACACTAAGACTAAAAAGAAGAAGAGTGGTAAGGCACAGGCTGGTGATGGTGATGGTGAGCGACCTCCAGAGTGCAAGCAGCAGTAATTGTTTGTTTCTTCGGAGTATCATGTGGCTGATGGGTGTTTTTGAGGTCCTATGGTGCCTGACGGGAAAGTGGGTTTCAATTTCATGCAATTTTTCATAGTCCTTGATTCATTTTCCTCCCTAGATCCGATAGTCTGAATTTATTGAGTCAATTTCTCCTTTTTCCCATATTTTGGGAGAATGTGGTTATATATTTGTAGTCAGGGATGCTGTGATTTGTTACTGTTGGAATTTGTACGTCATTCCAGACACTTCACATATATTATAGGTTGTGCTTTGTTACTATAATTTTTCTTATTAATTTATTTATTCACAATTTTGTTAACTTGAATTTATATTGAGGCAAGAAGTTCATTTTTCCCCCTGC

Coding sequences of Glyma15g18600

Limit To All Plant Sequences

>Glyma15g18600.1   sequence type=CDS   gene model=Glyma15g18600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCAACGACAACATCGCCGTGACAGATCTCACTTCTGCCCTCAATGAAGAGAATCGCGCCGACCTAGTCAATGCTCTCAAGAGCAAGATTCAGAGTCTGGCTGGGGCGCATTCTGATGTTCTAGAGACTCTATCCCCGAATGTCAGGAAGCGTGTTGAATCTCTTAGAGAAATTCAGGGTAAACATGATGAACTAGAGGCAGACTTCTTGAAGGAGAGAGAAGCTCTTGAAGCAAAGTACCAAAAACTGTATCAGCCATTGTACACAAAGCGCTATGAAATTGTAAATGGTGTTACTGAAGTGGAAGGGGCAGCAAATGAATCAACAGATGAATCAGAAGAGAATAAAGAGAAAGGAGTGCCTTCTTTTTGGCTCAATGCAATGAAAAATAATGATGTGTTAGCTGAAGAGATTTCAGAGCGTGATGAAGGTGCTCTCAAGTTTCTTAAAGATATCAAGTGGAGCAGGATAGAAAATCCTAAAGGGTTCAAGCTTGATTTCTTCTTTGATACCAATCCTTACTTTTCAAATACCGTCTTGACAAAAACATATCATATGATTGATGAGGATGAACCTATATTGGAGAAAGCAATTGGGACGGAAATTGAATGGTACCCGGGAAAATGCTTGACTCAGAAGGTTTTGAAGAAGAAGCCTAAGAAGGGTTCAAAGAATGCTAAACCAATTACCAAAACTGAAAGCTGTGAAAGCTTCTTCAATTTTTTCAAACCACCAGAAGTCCCTGAAGATGATGCTGACATTGATGAAGATTTGGCTGAAGAACTTCAGAATCAGATGGAACAAGATTATGACATTGGGTCAACATTAAGAGATAAAATTATCCCTCATGCTGTATCATGGTTTACTGGGGAGGCCGCTCAGGGAGATGAGTTTGAAGACCTGGAGGATGATGAGGACGAAGAGGAAGATGAGGACGAAGATGAGGACGAAGAGGATGACGAGGACGAAGACGATGAAGAGGAGGATGACACTAAGACTAAAAAGAAGTTATCTGCTGTTAAGAAGAGTGGTAAGGCACAGGCTGGTGATGGTGATGGTGAGCGACCTCCAGAGTGCAAGCAGCAGTAA

>Glyma15g18600.2   sequence type=CDS   gene model=Glyma15g18600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCAACGACAACATCGCCGTGACAGATCTCACTTCTGCCCTCAATGAAGAGAATCGCGCCGACCTAGTCAATGCTCTCAAGAGCAAGATTCAGAGTCTGGCTGGGGCGCATTCTGATGTTCTAGAGACTCTATCCCCGAATGTCAGGAAGCGTGTTGAATCTCTTAGAGAAATTCAGGGTAAACATGATGAACTAGAGGCAGACTTCTTGAAGGAGAGAGAAGCTCTTGAAGCAAAGTACCAAAAACTGTATCAGCCATTGTACACAAAGCGCTATGAAATTGTAAATGGTGTTACTGAAGTGGAAGGGGCAGCAAATGAATCAACAGATGAATCAGAAGAGAATAAAGAGAAAGGAGTGCCTTCTTTTTGGCTCAATGCAATGAAAAATAATGATGTGTTAGCTGAAGAGATTTCAGAGCGTGATGAAGGTGCTCTCAAGTTTCTTAAAGATATCAAGTGGAGCAGGATAGAAAATCCTAAAGGGTTCAAGCTTGATTTCTTCTTTGATACCAATCCTTACTTTTCAAATACCGTCTTGACAAAAACATATCATATGATTGATGAGGATGAACCTATATTGGAGAAAGCAATTGGGACGGAAATTGAATGGTACCCGGGAAAATGCTTGACTCAGAAGGTTTTGAAGAAGAAGCCTAAGAAGGGTTCAAAGAATGCTAAACCAATTACCAAAACTGAAAGCTGTGAAAGCTTCTTCAATTTTTTCAAACCACCAGAAGTCCCTGAAGATGATGCTGACATTGATGAAGATTTGGCTGAAGAACTTCAGAATCAGATGGAACAAGATTATGACATTGGGTCAACATTAAGAGATAAAATTATCCCTCATGCTGTATCATGGTTTACTGGGGAGGCCGCTCAGGGAGATGAGTTTGAAGACCTGGAGGATGATGAGGACGAAGAGGAAGATGAGGACGAAGATGAGGACGAAGAGGATGACGAGGACGAAGACGATGAAGAGGAGGATGACACTAAGACTAAAAAGAAGAAGAGTGGTAAGGCACAGGCTGGTGATGGTGATGGTGAGCGACCTCCAGAGTGCAAGCAGCAGTAA

Predicted protein sequences of Glyma15g18600

Limit To All Plant Sequences

>Glyma15g18600.1   sequence type=predicted peptide   gene model=Glyma15g18600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTNDNIAVTDLTSALNEENRADLVNALKSKIQSLAGAHSDVLETLSPNVRKRVESLREIQGKHDELEADFLKEREALEAKYQKLYQPLYTKRYEIVNGVTEVEGAANESTDESEENKEKGVPSFWLNAMKNNDVLAEEISERDEGALKFLKDIKWSRIENPKGFKLDFFFDTNPYFSNTVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKVLKKKPKKGSKNAKPITKTESCESFFNFFKPPEVPEDDADIDEDLAEELQNQMEQDYDIGSTLRDKIIPHAVSWFTGEAAQGDEFEDLEDDEDEEEDEDEDEDEEDDEDEDDEEEDDTKTKKKLSAVKKSGKAQAGDGDGERPPECKQQ*

>Glyma15g18600.2   sequence type=predicted peptide   gene model=Glyma15g18600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTNDNIAVTDLTSALNEENRADLVNALKSKIQSLAGAHSDVLETLSPNVRKRVESLREIQGKHDELEADFLKEREALEAKYQKLYQPLYTKRYEIVNGVTEVEGAANESTDESEENKEKGVPSFWLNAMKNNDVLAEEISERDEGALKFLKDIKWSRIENPKGFKLDFFFDTNPYFSNTVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKVLKKKPKKGSKNAKPITKTESCESFFNFFKPPEVPEDDADIDEDLAEELQNQMEQDYDIGSTLRDKIIPHAVSWFTGEAAQGDEFEDLEDDEDEEEDEDEDEDEEDDEDEDDEEEDDTKTKKKKSGKAQAGDGDGERPPECKQQ*

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