SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G11900 | AT | Annotation by Michelle Graham. TAIR10: Translation initiation factor SUI1 family protein | chr5:3834154-3836023 FORWARD LENGTH=198 | SoyBase | E_val: 6.00E-112 | ISS |
| GO:0006413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational initiation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003743 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity | SoyBase | N/A | ISS |
| KOG3239 | KOG | Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1) | JGI | ISS | |
| PTHR12789 | Panther | DENSITY-REGULATED PROTEIN HOMOLOG | JGI | ISS | |
| PF01253 | PFAM | Translation initiation factor SUI1 | JGI | ISS | |
| UniRef100_D7M4D9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor SUI1 family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M4D9_ARALL | SoyBase | E_val: 2.00E-109 | ISS |
| UniRef100_I1MH79 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MH79_SOYBN | SoyBase | E_val: 7.00E-134 | ISS |
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Glyma15g18500 not represented in the dataset |
Glyma15g18500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g07170 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g170200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g18500.1 sequence type=CDS gene model=Glyma15g18500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAGAAACCCCAACCGGTTCGGGTTCTATACTGCGGGGTGTGCAGCTTGCCCCCCGAATACTGCGAATTCGGATCCGATTTCGAGAAATGCAAACCCTGGTTGATCCAAAACGTCCCTGACCTATACCCTGATCTTCTCAAAGAGGCAAATGAGAAGGAAGCTGATAAAGTTGCTGACAAACTACAAAGTACCGGTATATCAGGAGCTGGCGATGGAGCTGCTTCCTCAGCACCGAAGCAAGAAGAGGTGAAGCGTCTTCCTGGTGGGAAGATTAAGAAAAAGGATAAGCAAGAGGTTGTTATTGAGAAGGTTGTACGTAACAAGCGAAAGTGTATCACCACTGTGAAGGGACTGGAACTTTTCGGTGTCAAGCTCAGTGATGCTTCCAAGAAACTCGGGAAAAAGTTTGCTACAGGAGCCTCCGTTGTCAAGGGACCAAGTGAGAAAGAACAAATTGATGTTCAAGGGGATATAGCTTATGACATCGTGGAGTTCATTACAGATACATGGCCTGATGTTCCAGAAGCAGCAATTTTCTTTATAGAAGATGGGAGAAAGGTCCCAGCTGCTTGA
>Glyma15g18500.1 sequence type=predicted peptide gene model=Glyma15g18500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEKPQPVRVLYCGVCSLPPEYCEFGSDFEKCKPWLIQNVPDLYPDLLKEANEKEADKVADKLQSTGISGAGDGAASSAPKQEEVKRLPGGKIKKKDKQEVVIEKVVRNKRKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPSEKEQIDVQGDIAYDIVEFITDTWPDVPEAAIFFIEDGRKVPAA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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