Report for Sequence Feature Glyma15g18450
Feature Type: gene_model
Chromosome: Gm15
Start: 15210545
stop: 15218528
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g18450
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G19520 AT
Annotation by Michelle Graham. TAIR10: Transducin family protein / WD-40 repeat family protein | chr2:8456006-8459235 FORWARD LENGTH=507
SoyBase E_val: 0 ISS
GO:0006281 GO-bp
Annotation by Michelle Graham. GO Biological Process: DNA repair
SoyBase N/A ISS
GO:0009826 GO-bp
Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth
SoyBase N/A ISS
GO:0009908 GO-bp
Annotation by Michelle Graham. GO Biological Process: flower development
SoyBase N/A ISS
GO:0009965 GO-bp
Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis
SoyBase N/A ISS
GO:0010090 GO-bp
Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis
SoyBase N/A ISS
GO:0010224 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to UV-B
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005730 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleolus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0080008 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex
SoyBase N/A ISS
GO:0046872 GO-mf
Annotation by Michelle Graham. GO Molecular Function: metal ion binding
SoyBase N/A ISS
KOG0264
KOG
Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1
JGI ISS
PTHR22850 Panther
WD40 REPEAT FAMILY
JGI ISS
PTHR22850:SF14 Panther
WD-40 REPEAT PROTEIN
JGI ISS
PF00400 PFAM
WD domain, G-beta repeat
JGI ISS
PF12265 PFAM
Histone-binding protein RBBP4 or subunit C of CAF1 complex
JGI ISS
UniRef100_G3E7N1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: FVE protein n=1 Tax=Glycine max RepID=G3E7N1_SOYBN
SoyBase E_val: 0 ISS
UniRef100_I1MH75 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MH75_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g18450
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g18450
Paralog Evidence Comments
Glyma09g07120 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g18450 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g169800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g18450
Coding sequences of Glyma15g18450
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g18450.1 sequence type=CDS gene model=Glyma15g18450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGACTCCTCCTCCGCAACAAGGCGTGGTGAAGAAGAAGGAGACAAGGGGCCGAAAACCCAAGCCGAAAGACGAACACGCCAAGGCGTTGAAGGAAGGGAGAAAAACACAGCAACAACAACATGATCAGCAGCAACAACAACAACAGCAACATCAACCTTCGGTGGACGAGAAATACACGCAGTGGAAGTCCCTTGTTCCTGTCCTCTACGACTGGCTCGCCAACCACAACCTCGTCTGGCCCTCTCTCTCTTGCCGGTGGGGCCCTCAGCTTGAACAAGCCACTTACAAGAATCGTCAAAGACTCTACCTTTCTGAGCAGACTGATGGTAGCGTGCCGAATACTCTGGTGATTGCAAATTGCGAGGTTGTGAAGCCTAGGGTTGCAGCTGCAGAACACATTTCGCAGTTTAATGAAGAGGCACGGTCCCCATTTGTGAAGAAGTACAAGACCATCATACATCCTGGCGAGGTGAACAGAATTAGGGAATTGCCACAAAATTCCAAGATAGTGGCTACACATACAGACAGCCCTGATGTCCTTGTTTGGGATGTTGAAAGTCAACCTAATCGCCATGCTGTCCTTGGAGCTACAAACTCTCGTCCTGATTTGATATTGACTGGACACCAAGATAATGCAGAATTTGCTCTTGCAATGTGCCCAACTGAACCCTATGTTCTTTCAGGAGGAAAGGACAAAACAGTGGTGTTGTGGAGTATTGAAGACCATATAACATCTGCTGCCACAGACTCCAAATCTGGTGGGTCAATTATCAAACAAAACTCTAAATCTGGAGAAGGCAATGATAAAACTGCTGATGGCCCTACTGTTGGACCACGAGGCATTTATTGTGGGCATGAGGATACAGTTGAAGATGTGACTTTCTGCCCATCTAGTGCACAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATCTTATGGGATGCACGTGTTGGCTCTAGCCCTGTGGTTAAGGTTGAGAAAGCTCATAATGCTGATCTTCACTGTGTGGACTGGAATCCACATGATGATAATCTGATTCTTACCGGGTCAGCAGACAATTCTGTTCGCATGTTTGATCGCCGCAATCTCACCACTAATGGAGTTGGATCACCCATCCACAAGTTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCAGTATTCGGAAGTTCAGCTGAAGATGGTCTCTTGAACATTTGGGACTATGAGAAGGTTGGAAAAAAGATAGAGCGAACTGGAAAATCAATAAGTTCTCCTCCAGGGTTGTTTTTCCAACATGCAGGTCATAGGGATAAAGTAGTTGACTTCCATTGGAATGCATATGATCCATGGACCATTGTTAGTGTGTCTGATGACTGTGAAAGTACTGGAGGAGGGGGAACATTGCAGATATGGCGCATGAGTGATTTGATCTACAGACCAGAAGATGAGGTTTTGGCCGAGCTTGAGAAATTCAAATCTCATGTGGTGGCGTGTGCTTCAAAGACTGAAAAATGA
Predicted protein sequences of Glyma15g18450
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g18450.1 sequence type=predicted peptide gene model=Glyma15g18450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
METPPPQQGVVKKKETRGRKPKPKDEHAKALKEGRKTQQQQHDQQQQQQQQHQPSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATDSKSGGSIIKQNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERTGKSISSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHVVACASKTEK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
