SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G13580 | AT | Annotation by Michelle Graham. TAIR10: Ribosomal protein L30/L7 family protein | chr3:4433809-4435109 FORWARD LENGTH=244 | SoyBase | E_val: 5.00E-153 | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0015934 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0022625 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit | SoyBase | N/A | ISS |
| GO:0022626 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| KOG3184 | KOG | 60S ribosomal protein L7 | JGI | ISS | |
| PTHR11524 | Panther | 60S RIBOSOMAL PROTEIN L7 | JGI | ISS | |
| PF00327 | PFAM | Ribosomal protein L30p/L7e | JGI | ISS | |
| PF08079 | PFAM | Ribosomal L30 N-terminal domain | JGI | ISS | |
| UniRef100_B9SDR8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L7, putative n=1 Tax=Ricinus communis RepID=B9SDR8_RICCO | SoyBase | E_val: 4.00E-155 | ISS |
| UniRef100_I1MH48 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MH48_SOYBN | SoyBase | E_val: 4.00E-175 | ISS |
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Glyma15g18170 not represented in the dataset |
Glyma15g18170 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g06860 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g167400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g18170.4 sequence type=transcript gene model=Glyma15g18170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAAGAAAAAAGAGAGTGGTGGAAAGATCAGATGAAGGCCCATTAATTCACAAAGAGTAAAGGCCCAATATTCAAAGCAGATGGAAAACCCTATATATAAAGCTCGGAGAACTCCCCGCACACTCACCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCAAATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAAAGGAACGAGGAGTGGGCTTTGGCGAAGAAGCAGGAACTCGATGCCGCTAAGAAAATGAGGTTCGAAACGCGGAAGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGGGTACCCTAATTTGAAGAGTGTTAGAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGGTCCGTGTGGTCTATTCTGTAGTCCTCTGTAAACACTTCCATTGCTTGTTTGTTCTATTACTTAGTTTTTTTCCCTGACATAACATTCAATGCCAGACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTTTCAAGCTCAAAGCTCCCCTGGGTGGTCTGGAGAAGAAAAGAAATCATTATGTTGAAGGAGGTGATGCTGGCAACAGGGAGGATTACATAAATGAGCTTATTAGAAGGATGAATTAGTTTTTTTTTCCCATACCGTTAGTGTTAATTTTGACGCTAAAACACTCTTTTTGTTTATGCTTTTATTATTTTGAATGATGTATGTGCTGATTGAGATATTAATTCGTTGCTTGCCATTCAATGAAATGTTCCTTAGCTTTTTGAGATAAGTTAATTAAATTTGAATTTGATCCTTAATAGTGCAATTTGGCTCTTATATGGTGCAAGTGTGCAACCATCCAAATCATAAGGATCGTGGTCAATGTTTTT
>Glyma15g18170.3 sequence type=CDS gene model=Glyma15g18170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAACCCTATATATAAAGCTCGGAGAACTCCCCGCACACTCACCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCAAATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAAAGGAACGAGGAGTGGGCTTTGGCGAAGAAGCAGGAACTCGATGCCGCTAAGAAAATGAGGTTCGAAACGCGGAAGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGGGTACCCTAATTTGAAGAGTGTTAGAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTTTCAAGCTCAAAGCTCCCCTGGGTGGTCTGGAGAAGAAAAGAAATCATTATGTTGAAGGAGGTGATGCTGGCAACAGGGAGGATTACATAAATGAGCTTATTAGAAGGATGAATTAG >Glyma15g18170.4 sequence type=CDS gene model=Glyma15g18170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAACCCTATATATAAAGCTCGGAGAACTCCCCGCACACTCACCCTCCGCCGCCGTTGCAAGCAGAGCACAACATCGATTATCCAAATGGGCGAAGCAAAGGCCTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAAAGGAACGAGGAGTGGGCTTTGGCGAAGAAGCAGGAACTCGATGCCGCTAAGAAAATGAGGTTCGAAACGCGGAAGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGGGTACCCTAATTTGAAGAGTGTTAGAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGGTCCGTGTGGTCTATTCTGTAGTCCTCTGTAAACACTTCCATTGCTTGTTTGTTCTATTACTTAGTTTTTTTCCCTGA
>Glyma15g18170.3 sequence type=predicted peptide gene model=Glyma15g18170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MENPIYKARRTPRTLTLRRRCKQSTTSIIQMGEAKALVPESVVKKEKRNEEWALAKKQELDAAKKMRFETRKLIFNRAKQYSKEYDEQQKELIRLKREAKLKGGFYVEPEAKLLFIIRIRGINAMDPKTRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVNKQRIALTDNSIIEQTLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLEKKRNHYVEGGDAGNREDYINELIRRMN* >Glyma15g18170.4 sequence type=predicted peptide gene model=Glyma15g18170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MENPIYKARRTPRTLTLRRRCKQSTTSIIQMGEAKALVPESVVKKEKRNEEWALAKKQELDAAKKMRFETRKLIFNRAKQYSKEYDEQQKELIRLKREAKLKGGFYVEPEAKLLFIIRIRGINAMDPKTRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVNKQRIALTDNSIIEQVRVVYSVVLCKHFHCLFVLLLSFFP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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