Glyma15g17910 - SoyBase

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Report for Sequence Feature Glyma15g17910

Feature Type:	gene_model
Chromosome:	Gm15
Start:	14401251
stop:	14407375
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g17910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G25940	AT	Annotation by Michelle Graham. TAIR10: ENTH/ANTH/VHS superfamily protein \| chr4:13169792-13172700 REVERSE LENGTH=601	SoyBase	E_val: 0	ISS
GO:0048268	GO-bp	Annotation by Michelle Graham. GO Biological Process: clathrin coat assembly	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0030118	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: clathrin coat	SoyBase	N/A	ISS
GO:0005543	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid binding	SoyBase	N/A	ISS
GO:0005545	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1-phosphatidylinositol binding	SoyBase	N/A	ISS
GO:0030276	GO-mf	Annotation by Michelle Graham. GO Molecular Function: clathrin binding	SoyBase	N/A	ISS
KOG0251	KOG	Clathrin assembly protein AP180 and related proteins, contain ENTH domain	JGI		ISS
PTHR22951	Panther	CLATHRIN ASSEMBLY PROTEIN	JGI		ISS
PTHR22951:SF1	Panther	CLATHRIN ASSEMBLY PROTEIN	JGI		ISS
PF07651	PFAM	ANTH domain	JGI		ISS
UniRef100_B9SP87	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Clathrin assembly protein, putative n=1 Tax=Ricinus communis RepID=B9SP87_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B60A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B60A related cluster n=1 Tax=unknown RepID=UPI000233B60A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g17910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g17910

Paralog	Evidence	Comments
Glyma09g06710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g17910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g165800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g17910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g17910

Limit To All Plant Sequences

>Glyma15g17910.1   sequence type=CDS   gene model=Glyma15g17910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAACGTTTCAGAGCTTTAGAAAAGCCTATGGAGCTCTCAAGGACTCTACCAAGGTTGGCCTTGCCAAAGTCAATAGCGAATACAAGGAGTTGGATATTGCAATTGTAAAAGCTACCAATCATGTGGAATATCCTCCCAAGGAACGTCATGTTCGAAAAATATTCTGTGCAACATTAGCACACCAGCCACGGGCAGATGTGGCATACTGCATTCACAAACTTGCTAAGAGACTTTCAAAGACGCGAAGTTGGATAGTTGCTATAAAGACATTGATAGTCATTCATAGGACTTTGAGAGAGGGTGATCCTACCTTTAGAGAAGAGATTCTTAACTACTCACGTAGGGGACATATTCTCCAAATATCCAATTTCAAAGATGATTCAAGCCCTTTAGCTTGGGATTGTTCTGCATGGGTGCGAACTTATGCACTATTTTTAGAAGAAAGACTTGAATGCTTTAGAGTCCTTAAATATGACATAGAATCCGAGCGTTTAACAAAAGCATCACCAGTGGTTAATAATGTACGTAGCAAAACTCGGTCGTTGGATAGTGATGATCTATTGGAGCAGCTACCTGCACTACAACAACTTCTATATCGCCTTATTGGTTGTCAACCTGAAGGATGTGCTTACAGCAATCATCTAGTACAATATGCGTTGGCCCTGGTTTTGAAAGAGAGTTTCAAAATATACTGCACACTCAATGACGGAATCATCAATCTTGTGGACGTGTTCTTTGATATGACAAGACATGACGCAGTGAAAGCTCTAAACATTTATAAAAGAGCTGGCCAACAGGCTGAAAATCTTGCTGACTTCTATGAATACTGCAAAGGCTTGGACCTTACTAGGAATTTCCAATTTCCAACACTGAGACAGCCACCTCCCTCTTTCCTTGCAACAATGGAAGAATACATTAAAGAAGCACCACAGACAGGCTATGTTAATAAGAAAGTGGAGTATCAGGAAAATGAAGAATCATCTAAAGAAGAATCAGAATCCAATGAATCAGCAGAGCCTCAAGCAAATGAAGAACAAGTTGAAGAAGTCAATGAGGAAGAGTCAGTGGAAGAGGAAGAAGAACAACCTAAGGAGGAGGAGGTAGAGCCTCCTCCTTTGATATCAACTGATGATGGTACAAATGATTTGCTGGGTCTTAATGAAATAAATCCAAAAGCTATGGAACTGGAGGAAAGCAATGCCATGGCTCTTGCAATTGTACCACCTGGTGGAAATAATCCAAACAATCTTGCTTTGAGTAACTTTGATGGGACTACTGGATGGGAACTTTCACTAGTTACAACACCAAGTAACCATTCCAGTCAAGCCCCAGATCGCAGATTGGCTGGTGGTTTTGACAAACTATTACTGGATAGTCTATATGAAGATGAAAATGCCAGGAGACAACTCCAACTCCAAAATGCAGGTTATGGACATAGTGGAACAATGGATATACAGAACAACAACCCATTTGATCATTACAACCAACAGGATCCCTTTGCAATGTCCAACAACATAGCACCTCCCCCTAGTGTGCAAATGGCACTAATGTCTCAACAACAGCAGCAACAACAAATGATGTTCCAACAGCAGCAAATGATGTACCAACAAGCACAACAACAGCACAACAACATGATGATGGTCCCTTACCACCAGCAACAACCATATAACCAATACCCTCAACAGATGTATAATTCAAGTTCTCATAATCCATTTGGAGATCCTTTACCGGTACCAAACTATAATCATAGTTCCATGCCCCAACAGGGAAATTACAATTTAATGTAA

Predicted protein sequences of Glyma15g17910

Limit To All Plant Sequences

>Glyma15g17910.1   sequence type=predicted peptide   gene model=Glyma15g17910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTFQSFRKAYGALKDSTKVGLAKVNSEYKELDIAIVKATNHVEYPPKERHVRKIFCATLAHQPRADVAYCIHKLAKRLSKTRSWIVAIKTLIVIHRTLREGDPTFREEILNYSRRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRVLKYDIESERLTKASPVVNNVRSKTRSLDSDDLLEQLPALQQLLYRLIGCQPEGCAYSNHLVQYALALVLKESFKIYCTLNDGIINLVDVFFDMTRHDAVKALNIYKRAGQQAENLADFYEYCKGLDLTRNFQFPTLRQPPPSFLATMEEYIKEAPQTGYVNKKVEYQENEESSKEESESNESAEPQANEEQVEEVNEEESVEEEEEQPKEEEVEPPPLISTDDGTNDLLGLNEINPKAMELEESNAMALAIVPPGGNNPNNLALSNFDGTTGWELSLVTTPSNHSSQAPDRRLAGGFDKLLLDSLYEDENARRQLQLQNAGYGHSGTMDIQNNNPFDHYNQQDPFAMSNNIAPPPSVQMALMSQQQQQQQMMFQQQQMMYQQAQQQHNNMMMVPYHQQQPYNQYPQQMYNSSSHNPFGDPLPVPNYNHSSMPQQGNYNLM*

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