SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G13940 | AT | Annotation by Michelle Graham. TAIR10: DNA binding;DNA-directed RNA polymerases | chr3:4600647-4602412 REVERSE LENGTH=442 | SoyBase | E_val: 3.00E-113 | ISS |
| GO:0006351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003899 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity | SoyBase | N/A | ISS |
| KOG4183 | KOG | RNA polymerase I 49 kDa subunit | JGI | ISS | |
| PTHR14440 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR14440:SF6 | Panther | DNA BINDING / DNA-DIRECTED RNA POLYMERASE | JGI | ISS | |
| PF06870 | PFAM | A49-like RNA polymerase I associated factor | JGI | ISS | |
| UniRef100_G7KQW5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase I subunit rpa49 n=1 Tax=Medicago truncatula RepID=G7KQW5_MEDTR | SoyBase | E_val: 6.00E-157 | ISS |
| UniRef100_I1MH26 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MH26_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g17850 not represented in the dataset |
Glyma15g17850 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g165300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g17850.2 sequence type=transcript gene model=Glyma15g17850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTATTTAAATTTAACTTTCGTACCGTCTGCATACACTGCGACTTAAAAAACACAGTTCAGCCCCTAGGGTTCAGTTGGGGTTTAGGGTTCTCTCATCACATCGGTGTTATCACTGTCACGGCGTGAGCTCATCTCATCGTTGAGTATAATAATGGATTCGGACACTGAAGAAACAAAACCCAAGCATCCCAAGAAGGAGAAGAAAAAGAAGAACAAGAAGAAAGAGGTTGAGGTCGAGGTTGTCCGTGAGCACCCCAATAAAACACCTCCTGTTGTTGGTTATTTCCCTTCCGGATTTGATCCGGTCAAGAATCATGGCGGCGGTCCCTCCAATTTTCAAGTTTACCGGCACAGGAGCATGCCCAAGAGGCTGGAGCTTGTGGTTCGCCCTCCCCGGTCTTCAGTGGAATTTGTTGGAACCAGTTATGCTGGCGAGGCTGCGGCCAGACACCGTGCCAAGTACGCACTTGGGGTTCTTGACAAGGAAGCCGGGACCCTGAAGGTTGTGCCCATTGCTGGTAATAAGATATTCAGATTGGAGCCGAAGGTTAAAGGCGTGGGAGCTTTTGAAAATGAGCCTGCAAATTCAACGTTGGAAGAGATGACTCAGCAGCAGAAGTTTGCGGAGACTACTTCTATATGGGGAACAAAGAAGGATATAGAGAAGGCTAAAAAGAAGCTAGCTCTCAGACAAGATGAAGATCCTGATTCTCAAAGGAATCTGGATGTGAAAATGAAAAGTGTTACAGTAAACAAAAAGGCTCTTGAAAGTACAGAATCTCATGTTTCTCGCAATATACCACCGTATGATGCTTCTGCAACTACACCTCAGGAGGCATATATATTGGACAAAATCATCCTTAAGGGAGAATGGGATTATCTTGAAGACATTTATAATAATTTGCAACGGGGAGAAGAAGCAGACTTCAGTGCTTATCCAACTTTTGTTCGCAACAGGATAGAAAGATTGAGGAAAATTAAGGATGAGTCAGAAAAGAAGCAGCTTTCCTGCATATTCTCATACATCAATCATCTTATAAAGTTCAAAGATCAGCATTCCTTTGATGTTTTGTCGGCAAAGGGCCATAAAATCCCCAACATTCTGCGTCATAAGTTTTCAAATATGTTTGCTGTTTCTGAATCAAAAAGGCTGCCCCCTGAAAAGATTAGTCTTCTCATTTGTTATGTGTTGGTGCTTACGCTTTTCTCTGATGAGTTCCGAACTGACTACACAGATATTGCAAAGGATCTGAGCATGAACATACTGCCCGTGAGACAACTCTATGAGCATTTGGGTTGCAAAATTTCCCGCCAGAAAAACATATTTTATGCCACACTTCCTGTCCCTCTTAAATTTCCTGAGTTGAGGCAGAGGAAGCGGAAAAGGTAGATAGATCACTATGTGAGTCCTTCTTTGGGGTCATCGACTGTTCTAAATCTTGTCTTCCAGTCTCGTTGGTGCAGTGATATCAAAAATTACTATCCAACACTTCCTATAGGTTGTTTGTTATTATTTTCTATCTGCATACATTTGAACATTGTTTGCTGTTTTAGTATTTTAAGAAGCGATTTTGAAATTAGCACACTCAATTTATTTTGATAGAAGATTTCCTTATTGCTGTTGAACGAACTGTTTAGAAGACTCTTTGGTGAAAAAAGAGTGTAGATTTATATAACACACAAAAAGCTGTTTGGATCCTTAATGCAGCTACGAATATCAGAAACATGCTTTTTTTACTAGCAAAAATGAAGTCTCAAAGATGTTATAGCCTCAACAATTAGACGGTAACCATCCAACAAGCTAAACCTGAATTCGTGCTTCCCACAATACAATCTCAAAGAGCATGGTTAGAAAATTGTGTATCTTCCTTTTTCCTTTTGTATAAATTGTAAAACTGTATGC
>Glyma15g17850.1 sequence type=CDS gene model=Glyma15g17850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCGGACACTGAAGAAACAAAACCCAAGCATCCCAAGAAGGAGAAGAAAAAGAAGAACAAGAAGAAAGAGGTTGAGGTTGTCCAACCTCAATCTGAACAGATTGAGGTTGAGGTCGAGGTTGTCCGTGAGCACCCCAATAAAACACCTCCTGTTGTTGGTTATTTCCCTTCCGGATTTGATCCGGTCAAGAATCATGGCGGCGGTCCCTCCAATTTTCAAGTTTACCGGCACAGGAGCATGCCCAAGAGGCTGGAGCTTGTGGTTCGCCCTCCCCGGTCTTCAGTGGAATTTGTTGGAACCAGTTATGCTGGCGAGGCTGCGGCCAGACACCGTGCCAAGTACGCACTTGGGGTTCTTGACAAGGAAGCCGGGACCCTGAAGGTTGTGCCCATTGCTGGTAATAAGATATTCAGATTGGAGCCGAAGGTTAAAGGCGTGGGAGCTTTTGAAAATGAGCCTGCAAATTCAACGTTGGAAGAGATGACTCAGCAGCAGAAGTTTGCGGAGACTACTTCTATATGGGGAACAAAGAAGGATATAGAGAAGGCTAAAAAGAAGCTAGCTCTCAGACAAGATGAAGATCCTGATTCTCAAAGGAATCTGGATGTGAAAATGAAAAGTGTTACAGTAAACAAAAAGGCTCTTGAAAGTACAGAATCTCATGTTTCTCGCAATATACCACCGTATGATGCTTCTGCAACTACACCTCAGGAGGCATATATATTGGACAAAATCATCCTTAAGGGAGAATGGGATTATCTTGAAGACATTTATAATAATTTGCAACGGGGAGAAGAAGCAGACTTCAGTGCTTATCCAACTTTTGTTCGCAACAGGATAGAAAGATTGAGGAAAATTAAGGATGAGTCAGAAAAGAAGCAGCTTTCCTGCATATTCTCATACATCAATCATCTTATAAAGTTCAAAGATCAGCATTCCTTTGATGTTTTGTCGGCAAAGGGCCATAAAATCCCCAACATTCTGCGTCATAAGTTTTCAAATATGTTTGCTGTTTCTGAATCAAAAAGGCTGCCCCCTGAAAAGATTAGTCTTCTCATTTGTTATGTGTTGGTGCTTACGCTTTTCTCTGATGAGTTCCGAACTGACTACACAGATATTGCAAAGGATCTGAGCATGAACATACTGCCCGTGAGACAACTCTATGAGCATTTGGGTTGCAAAATTTCCCGCCAGAAAAACATATTTTATGCCACACTTCCTGTCCCTCTTAAATTTCCTGAGTTGAGGCAGAGGAAGCGGAAAAGGTAG >Glyma15g17850.2 sequence type=CDS gene model=Glyma15g17850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCGGACACTGAAGAAACAAAACCCAAGCATCCCAAGAAGGAGAAGAAAAAGAAGAACAAGAAGAAAGAGGTTGAGGTCGAGGTTGTCCGTGAGCACCCCAATAAAACACCTCCTGTTGTTGGTTATTTCCCTTCCGGATTTGATCCGGTCAAGAATCATGGCGGCGGTCCCTCCAATTTTCAAGTTTACCGGCACAGGAGCATGCCCAAGAGGCTGGAGCTTGTGGTTCGCCCTCCCCGGTCTTCAGTGGAATTTGTTGGAACCAGTTATGCTGGCGAGGCTGCGGCCAGACACCGTGCCAAGTACGCACTTGGGGTTCTTGACAAGGAAGCCGGGACCCTGAAGGTTGTGCCCATTGCTGGTAATAAGATATTCAGATTGGAGCCGAAGGTTAAAGGCGTGGGAGCTTTTGAAAATGAGCCTGCAAATTCAACGTTGGAAGAGATGACTCAGCAGCAGAAGTTTGCGGAGACTACTTCTATATGGGGAACAAAGAAGGATATAGAGAAGGCTAAAAAGAAGCTAGCTCTCAGACAAGATGAAGATCCTGATTCTCAAAGGAATCTGGATGTGAAAATGAAAAGTGTTACAGTAAACAAAAAGGCTCTTGAAAGTACAGAATCTCATGTTTCTCGCAATATACCACCGTATGATGCTTCTGCAACTACACCTCAGGAGGCATATATATTGGACAAAATCATCCTTAAGGGAGAATGGGATTATCTTGAAGACATTTATAATAATTTGCAACGGGGAGAAGAAGCAGACTTCAGTGCTTATCCAACTTTTGTTCGCAACAGGATAGAAAGATTGAGGAAAATTAAGGATGAGTCAGAAAAGAAGCAGCTTTCCTGCATATTCTCATACATCAATCATCTTATAAAGTTCAAAGATCAGCATTCCTTTGATGTTTTGTCGGCAAAGGGCCATAAAATCCCCAACATTCTGCGTCATAAGTTTTCAAATATGTTTGCTGTTTCTGAATCAAAAAGGCTGCCCCCTGAAAAGATTAGTCTTCTCATTTGTTATGTGTTGGTGCTTACGCTTTTCTCTGATGAGTTCCGAACTGACTACACAGATATTGCAAAGGATCTGAGCATGAACATACTGCCCGTGAGACAACTCTATGAGCATTTGGGTTGCAAAATTTCCCGCCAGAAAAACATATTTTATGCCACACTTCCTGTCCCTCTTAAATTTCCTGAGTTGAGGCAGAGGAAGCGGAAAAGGTAG
>Glyma15g17850.1 sequence type=predicted peptide gene model=Glyma15g17850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSDTEETKPKHPKKEKKKKNKKKEVEVVQPQSEQIEVEVEVVREHPNKTPPVVGYFPSGFDPVKNHGGGPSNFQVYRHRSMPKRLELVVRPPRSSVEFVGTSYAGEAAARHRAKYALGVLDKEAGTLKVVPIAGNKIFRLEPKVKGVGAFENEPANSTLEEMTQQQKFAETTSIWGTKKDIEKAKKKLALRQDEDPDSQRNLDVKMKSVTVNKKALESTESHVSRNIPPYDASATTPQEAYILDKIILKGEWDYLEDIYNNLQRGEEADFSAYPTFVRNRIERLRKIKDESEKKQLSCIFSYINHLIKFKDQHSFDVLSAKGHKIPNILRHKFSNMFAVSESKRLPPEKISLLICYVLVLTLFSDEFRTDYTDIAKDLSMNILPVRQLYEHLGCKISRQKNIFYATLPVPLKFPELRQRKRKR* >Glyma15g17850.2 sequence type=predicted peptide gene model=Glyma15g17850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSDTEETKPKHPKKEKKKKNKKKEVEVEVVREHPNKTPPVVGYFPSGFDPVKNHGGGPSNFQVYRHRSMPKRLELVVRPPRSSVEFVGTSYAGEAAARHRAKYALGVLDKEAGTLKVVPIAGNKIFRLEPKVKGVGAFENEPANSTLEEMTQQQKFAETTSIWGTKKDIEKAKKKLALRQDEDPDSQRNLDVKMKSVTVNKKALESTESHVSRNIPPYDASATTPQEAYILDKIILKGEWDYLEDIYNNLQRGEEADFSAYPTFVRNRIERLRKIKDESEKKQLSCIFSYINHLIKFKDQHSFDVLSAKGHKIPNILRHKFSNMFAVSESKRLPPEKISLLICYVLVLTLFSDEFRTDYTDIAKDLSMNILPVRQLYEHLGCKISRQKNIFYATLPVPLKFPELRQRKRKR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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