SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G53970 | AT | Annotation by Michelle Graham. TAIR10: proteasome inhibitor-related | chr3:19985208-19987132 FORWARD LENGTH=302 | SoyBase | E_val: 5.00E-93 | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0043248 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome assembly | SoyBase | N/A | ISS |
| GO:0051510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG4761 | KOG | Proteasome formation inhibitor PI31 | JGI | ISS | |
| PTHR13266 | Panther | PROTEASOME INHIBITOR | JGI | ISS | |
| PTHR13266:SF1 | Panther | PROTEASOME INHIBITOR | JGI | ISS | |
| PF08577 | PFAM | PI31 proteasome regulator | JGI | ISS | |
| PF11566 | PFAM | Proteasome Inhibitor PI31 | JGI | ISS | |
| UniRef100_B9T883 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Proteasome inhibitor, putative n=1 Tax=Ricinus communis RepID=B9T883_RICCO | SoyBase | E_val: 1.00E-95 | ISS |
| UniRef100_I1MH24 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MH24_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g17840 not represented in the dataset |
Glyma15g17840 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g06650 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g165200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g17840.2 sequence type=transcript gene model=Glyma15g17840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAACGTTTTACTAACGGAAAGAAGTGGTATTTAACCTATATAAAATTGCTAGACTGCAATTTTACTGATACTAAGTGTCTTCATGACCGAGAATTATCCAAAATCCTAACCCGACGATGGCGAGTCAAAAGTTGGTGCTGGCATTGATCAGGGCCGCGAGGCCAACCTTCCGAAACCAAAACGACAAAATCGCCTTTGCCGTTCACTCCTCCTTCCTCGCCTCTGGTTATGTCCTTACAGCTACGGGTCCCCAGGCCCTCTCCGACGATGCGTTTTCTGACCCATCCAATGACGAGGTGTCCGTTGATCACTGGAACGAGCTGAACGACGAGTACGCGTTCGTTTACGCGAATCCAGAAAAGGGTTCGGAGAAAGTGCTTGTCAAGTGCCTCGTGATGAACGACAAATTGCTCGTTCATGCTTTGACTCAAGGGTCGTCGGAGCCTTTGAGCCTTGAGATTGATGTTGGGGATTATGCTGAAGAGGATGGAGGCAGCAATTATTCTCAGCAGTTCAAGAATTTGGATAAGCTTGTGAAGAGAATAGATGGGGATATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAGCTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCAAATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTCCAGGGCCTGCTGCTGGAGTGTTTCCTTCAAGGGGTGGTCATGGCATTGGTGGAAGCATGCTCGTAGGGCCTAATGACCCCCGTTGGTTTGGTGGTATTGGTGGAGATCCTGCTTTTCCTGGAGGATTGCCGTAAGTTGTTTACATCTCCTTTTTATTATTTCCGAGTGATCAGTGTAGTTAAAGGCAGTGCAACCTACAAAGCATGCCTTAGGTGCTAAGGCGGGGGAAGGGAAGGTTCCAAGTTCTTGCTCTGAGGCAATGTATCTTCAATGAGGGGTGTTCCTCCCGGTGCACGATTTGATCCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCGAAGAGATGCTGATTCAGACTACATATAGGATCTGTTTGGATACAAGCACTTTGAGAGCTTTCTTACTGAAAATATAGTTTTTTCCCGTAACTTATAGCTTGTATCCAAACAACCTCATAGTATAGTTGTCGTAATATGTGGACAAGTTGTGTCAAGTCAATTTACTAAAAACAACTTGAGCAAATACTAGTTCTATTGACAAGTTCTGCATGCGTATTTTCTTTCAGGGCTATTAGTTTTATGCGAGGACAGGGAAATATGTCAAAATTTAATTACATATTTATAGTTTAAATAAGATCTAAGTCCTTATAGTATATATTCATAAGATTTAATTACATATTTATTTAATTACATGCTGATCCCTATCACGAAGTGTTTAGTATCAATATTTTTTCATATTTAAATATCTGTCTTGAATATGAATTTCAGTCTCTTATGATGCCTATAGTTATTGATTGCAAATCTTAGGTAAATTA
>Glyma15g17840.1 sequence type=CDS gene model=Glyma15g17840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAGTCAAAAGTTGGTGCTGGCATTGATCAGGGCCGCGAGGCCAACCTTCCGAAACCAAAACGACAAAATCGCCTTTGCCGTTCACTCCTCCTTCCTCGCCTCTGGTTATGTCCTTACAGCTACGGGTCCCCAGGCCCTCTCCGACGATGCGTTTTCTGACCCATCCAATGACGAGGTGTCCGTTGATCACTGGAACGAGCTGAACGACGAGTACGCGTTCGTTTACGCGAATCCAGAAAAGGGTTCGGAGAAAGTGCTTGTCAAGTGCCTCGTGATGAACGACAAATTGCTCGTTCATGCTTTGACTCAAGGGTCGTCGGAGCCTTTGAGCCTTGAGATTGATGTTGGGGATTATGCTGAAGAGGATGGAGGCAGCAATTATTCTCAGCAGTTCAAGAATTTGGATAAGCTTGTGAAGAGAATAGATGGGGATATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAGCTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCAAATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTCCAGGGCCTGCTGCTGGAGTGTTTCCTTCAAGGGGTGGTCATGGCATTGGTGGAAGCATGCTCGTAGGGCCTAATGACCCCCGTTGGTTTGGTGGTATTGGTGGAGATCCTGCTTTTCCTGGAGGATTGCCGGGTGTTCCTCCCGGTGCACGATTTGATCCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCGAAGAGATGCTGATTCAGACTACATATAG >Glyma15g17840.2 sequence type=CDS gene model=Glyma15g17840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAGTCAAAAGTTGGTGCTGGCATTGATCAGGGCCGCGAGGCCAACCTTCCGAAACCAAAACGACAAAATCGCCTTTGCCGTTCACTCCTCCTTCCTCGCCTCTGGTTATGTCCTTACAGCTACGGGTCCCCAGGCCCTCTCCGACGATGCGTTTTCTGACCCATCCAATGACGAGGTGTCCGTTGATCACTGGAACGAGCTGAACGACGAGTACGCGTTCGTTTACGCGAATCCAGAAAAGGGTTCGGAGAAAGTGCTTGTCAAGTGCCTCGTGATGAACGACAAATTGCTCGTTCATGCTTTGACTCAAGGGTCGTCGGAGCCTTTGAGCCTTGAGATTGATGTTGGGGATTATGCTGAAGAGGATGGAGGCAGCAATTATTCTCAGCAGTTCAAGAATTTGGATAAGCTTGTGAAGAGAATAGATGGGGATATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAGCTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCAAATTATTTTCCCTTCAGTTCCCATTGGCTCTGGTAGTGATCTTGTTCCAGGGCCTGCTGCTGGAGTGTTTCCTTCAAGGGGTGGTCATGGCATTGGTGGAAGCATGCTCGTAGGGCCTAATGACCCCCGTTGGTTTGGTGGTATTGGTGGAGATCCTGCTTTTCCTGGAGGATTGCCGTAA
>Glyma15g17840.1 sequence type=predicted peptide gene model=Glyma15g17840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASQKLVLALIRAARPTFRNQNDKIAFAVHSSFLASGYVLTATGPQALSDDAFSDPSNDEVSVDHWNELNDEYAFVYANPEKGSEKVLVKCLVMNDKLLVHALTQGSSEPLSLEIDVGDYAEEDGGSNYSQQFKNLDKLVKRIDGDILSKLDGSAKASSSSRSSETSDRTRQEIPDPVAGFGEPADPPTQIIFPSVPIGSGSDLVPGPAAGVFPSRGGHGIGGSMLVGPNDPRWFGGIGGDPAFPGGLPGVPPGARFDPYGPPGVPGFEPNKFARNPRRPGYDAHPDLQHFRRDADSDYI* >Glyma15g17840.2 sequence type=predicted peptide gene model=Glyma15g17840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASQKLVLALIRAARPTFRNQNDKIAFAVHSSFLASGYVLTATGPQALSDDAFSDPSNDEVSVDHWNELNDEYAFVYANPEKGSEKVLVKCLVMNDKLLVHALTQGSSEPLSLEIDVGDYAEEDGGSNYSQQFKNLDKLVKRIDGDILSKLDGSAKASSSSRSSETSDRTRQEIPDPVAGFGEPADPPTQIIFPSVPIGSGSDLVPGPAAGVFPSRGGHGIGGSMLVGPNDPRWFGGIGGDPAFPGGLP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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