SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G30074 | AT | Annotation by Michelle Graham. TAIR10: low-molecular-weight cysteine-rich 19 | chr4:14699844-14700560 REVERSE LENGTH=126 | SoyBase | E_val: 2.00E-27 | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| PF07333 | PFAM | S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) | JGI | ISS | |
| UniRef100_I1MH16 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MH16_SOYBN | SoyBase | E_val: 3.00E-69 | ISS |
| UniRef100_P82733 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Defensin-like protein 183 n=1 Tax=Arabidopsis thaliana RepID=DF183_ARATH | SoyBase | E_val: 7.00E-25 | ISS |
|
Glyma15g17740 not represented in the dataset |
Glyma15g17740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g164400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g17740.2 sequence type=CDS gene model=Glyma15g17740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGACTTATATCTCAAACTATTCTCTTCTCTTTGTAATGTTGGCTCTGACTATAACAGGCCTAATAGAAGTAAAAGGAAACACATGTTCACAACCATTGGGTGGATGTGGTCCTATGGGACAATGTGACCAGAGATGTAAAGCTCTACACATTGATGGACAAGGATCTTGTGACTTAGGCTTGTGCACTTGCTACTACGGTTGTGCAGGGCCTCCACCAAGTCCAACCCCACCTAAAATATGCAATAATGGTCTTGGGGTTTGCACTCTTCAGTGTGGTGATGCATGCTGTAATGCAAATTGTGCAAGAAAATATAATCAGGGAACAGGGATGTGTAGCACCATTGGTAACAACAACTTATGTACTTGCCAATATAGATGTGGCTGA
>Glyma15g17740.2 sequence type=predicted peptide gene model=Glyma15g17740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVTYISNYSLLFVMLALTITGLIEVKGNTCSQPLGGCGPMGQCDQRCKALHIDGQGSCDLGLCTCYYGCAGPPPSPTPPKICNNGLGVCTLQCGDACCNANCARKYNQGTGMCSTIGNNNLCTCQYRCG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
