SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G02550 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 370 Blast hits to 300 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 354; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr4:1120622-1121629 REVERSE LENGTH=307 | SoyBase | E_val: 4.00E-14 | ISS |
| GO:0010286 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heat acclimation | SoyBase | N/A | ISS |
| GO:0031347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_G7LAN9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PIF-like protein n=1 Tax=Medicago truncatula RepID=G7LAN9_MEDTR | SoyBase | E_val: 7.00E-10 | ISS |
| UniRef100_I1JEQ7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JEQ7_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma15g17611 not represented in the dataset |
Glyma15g17611 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g17611.1 sequence type=CDS gene model=Glyma15g17611 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCAAATGTTGTTGAATGCTTTGGGTGAAGAGGCAAATAAGGGAAATAGGCACGATGGTGCTTGGACAACACAAGCATACAACAACATGGTCGAAGCCTTAAGATCTACAATTGGACCAAATATCACAAAGAATCATATAAAGAATAGAATGAAGACACTAAAAAATCATTTTGCTGAAGCTTACGACTTGTTCCATAGCTTAAGTGGATTCTCTTGGAATTCAATAACTCGAAAATTTGATGCTGAGGACGACGTCTGGGAAGAGCTGATTAAAGGAAAGCCACATGCTGCAAGATGGAGAAAAATGCAAATTAAGCATTATGACATCTTGACTGAGTTATTTGCAACTGATAGGGCAAAAGGAAATGTTGCGAAAACAGCTAAGGAAAGGAGGAAACAATGGGAGAAGGAGAATATTGACTTGAATAACTATTTTGAAGATACAGAAATGTATGTGCCAAATGTTGGTATGTTTGATGAAAACCAATTTTCACCCCCCAACTTTGAGGATGCTAGTCCACAAAATGGTCAAACAAATCCTAGTGGCTTAAATACTTCAAGGGGTACAAAACGGAAGAGAAATGTGGTTGAGTTAGTTGAAGATCAATATGAGCGAATGAATGAAAGTATCATGACAATTGCTGAAGCTTTGAAAGAGGGAAATTCTGTTTCTAAGGAGCTGCACCAAGTTGCAGAGCGTCAAGTTGAAGTTGCTGAAAGACAAGTTGCAGTCATTGAAAAACAAGTTGAAATTGCTGAAAAACAAAATCTGATGTATGGGATCTTTTAG
>Glyma15g17611.1 sequence type=predicted peptide gene model=Glyma15g17611 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDQMLLNALGEEANKGNRHDGAWTTQAYNNMVEALRSTIGPNITKNHIKNRMKTLKNHFAEAYDLFHSLSGFSWNSITRKFDAEDDVWEELIKGKPHAARWRKMQIKHYDILTELFATDRAKGNVAKTAKERRKQWEKENIDLNNYFEDTEMYVPNVGMFDENQFSPPNFEDASPQNGQTNPSGLNTSRGTKRKRNVVELVEDQYERMNESIMTIAEALKEGNSVSKELHQVAERQVEVAERQVAVIEKQVEIAEKQNLMYGIF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
