Glyma15g17580 - SoyBase

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Report for Sequence Feature Glyma15g17580

Feature Type:	gene_model
Chromosome:	Gm15
Start:	13962453
stop:	13964555
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g17580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G25910	AT	Annotation by Michelle Graham. TAIR10: NFU domain protein 3 \| chr4:13164128-13165094 FORWARD LENGTH=236	SoyBase	E_val: 1.00E-92	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0051536	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding	SoyBase	N/A	ISS
PTHR11178	Panther	IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED	JGI		ISS
PF01106	PFAM	NifU-like domain	JGI		ISS
UniRef100_G7IN05	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NifU-like protein n=2 Tax=Medicago truncatula RepID=G7IN05_MEDTR	SoyBase	E_val: 9.00E-135	ISS
UniRef100_I1MGZ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGZ6_SOYBN	SoyBase	E_val: 4.00E-168	ISS

Expression Patterns of Glyma15g17580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g17580

Paralog	Evidence	Comments
Glyma09g06300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g17580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g163100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g17580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g17580

Limit To All Plant Sequences

>Glyma15g17580.2   sequence type=transcript   gene model=Glyma15g17580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAAACTTTAGGTGACTTTATTTTATTTTTTCTTTTATCATCACAAAGAATCAATGTCAGCCAATGAAGAAACGGTAGCTATCAGCATCTCTCTTGCTGCTACTAATATCAGAACTGAACTTTATCATGAAACCAAAAACGAGACAACATTTTATATAAACCAAAATAATTTCAGTTTCAGGCTGTTGGTAATATTCTTATGGTAGTTTTCTGGGTTTCCCACTCACACTCAGATGTTGGGTGGTGCACTTTTAACCCCAACAACTCAAAGCCTCAAGGCAACAAGAACAATTGCAATGCTTTATCCAACTCATAGATTATTGTCTCTTAAGAACCCAGTATCAAATACGAGAGGATTTTCATCAAAAGAGAATATTTTTATCAGAGGTCAACAAATCAACATTAAACAATTTTTTGGCCTTATCTCGGGTCATTCTCCACGAAACAAAGCAGGAGGAGTTGTTTCCCCCAGGTGTGGCCTGCCACTGACAGAAGAGAATGTGGAGAAGGTTTTAGATGAGGTAAGGCCTGGCTTGATGGCTGATGGAGGGAATGTGGCATTACATGAGATAGATGGTCTTGTTGTTGTCCTCAAGCTACAAGGGGCATGTGGATCATGTCCTAGCTCAGCTATGACATTGAAAATGGGAATTGAAACTCGCCTCCGGGATAAGATTCCAGAAATCTTGGAAGTGGAGCAGATAATGGACACTGAGACCGGTCTCGAGTTAACCGAAGAAAATGTTGAAAATGTAGGGGGAACTTCTTGCATCGTTTCTAGCATTTCCATAATTTCATTGGCCTTTTGGAATTTTGATTTTAAGTATGAGGTAAAAGCTAAGTGATCTGATTAAAATGTTTTTCTTTATGTATCATAGTCCTCAGCTTGACAAGGAATGATTGGTGTATTATGCAAAACCGTGATGAAATTCTTACAGCTTCTATA

Coding sequences of Glyma15g17580

Limit To All Plant Sequences

>Glyma15g17580.1   sequence type=CDS   gene model=Glyma15g17580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGGTGGTGCACTTTTAACCCCAACAACTCAAAGCCTCAAGGCAACAAGAACAATTGCAATGCTTTATCCAACTCATAGATTATTGTCTCTTAAGAACCCAGTATCAAATACGAGAGGATTTTCATCAAAAGAGAATATTTTTATCAGAGGTCAACAAATCAACATTAAACAATTTTTTGGCCTTATCTCGGGTCATTCTCCACGAAACAAAGCAGGAGGAGTTGTTTCCCCCAGGTGTGGCCTGCCACTGACAGAAGAGAATGTGGAGAAGGTTTTAGATGAGGTAAGGCCTGGCTTGATGGCTGATGGAGGGAATGTGGCATTACATGAGATAGATGGTCTTGTTGTTGTCCTCAAGCTACAAGGGGCATGTGGATCATGTCCTAGCTCAGCTATGACATTGAAAATGGGAATTGAAACTCGCCTCCGGGATAAGATTCCAGAAATCTTGGAAGTGGAGCAGATAATGGACACTGAGACCGGTCTCGAGTTAACCGAAGAAAATGTTGAAAATGTTCTTTCTGAAATTAGACCATACCTTGTTGGCACTGGGGGAGGAATATTAGAGCTTGTTCAGATAAAGGATTATGTTGTCAAAGTTCGGCTAAGTGGACCTGCAGCTGGGGTTACGACAGTTCGTGTTGCCTTAACACAGAAGCTGAGAGATAAGATACCTGCTATTGCAGCTGTGCAACTAATAGACTGA

>Glyma15g17580.2   sequence type=CDS   gene model=Glyma15g17580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGGTGGTGCACTTTTAACCCCAACAACTCAAAGCCTCAAGGCAACAAGAACAATTGCAATGCTTTATCCAACTCATAGATTATTGTCTCTTAAGAACCCAGTATCAAATACGAGAGGATTTTCATCAAAAGAGAATATTTTTATCAGAGGTCAACAAATCAACATTAAACAATTTTTTGGCCTTATCTCGGGTCATTCTCCACGAAACAAAGCAGGAGGAGTTGTTTCCCCCAGGTGTGGCCTGCCACTGACAGAAGAGAATGTGGAGAAGGTTTTAGATGAGGTAAGGCCTGGCTTGATGGCTGATGGAGGGAATGTGGCATTACATGAGATAGATGGTCTTGTTGTTGTCCTCAAGCTACAAGGGGCATGTGGATCATGTCCTAGCTCAGCTATGACATTGAAAATGGGAATTGAAACTCGCCTCCGGGATAAGATTCCAGAAATCTTGGAAGTGGAGCAGATAATGGACACTGAGACCGGTCTCGAGTTAACCGAAGAAAATGTTGAAAATGTAGGGGGAACTTCTTGCATCGTTTCTAGCATTTCCATAATTTCATTGGCCTTTTGGAATTTTGATTTTAAGTATGAGGTAAAAGCTAAGTGA

Predicted protein sequences of Glyma15g17580

Limit To All Plant Sequences

>Glyma15g17580.1   sequence type=predicted peptide   gene model=Glyma15g17580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGGALLTPTTQSLKATRTIAMLYPTHRLLSLKNPVSNTRGFSSKENIFIRGQQINIKQFFGLISGHSPRNKAGGVVSPRCGLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSAMTLKMGIETRLRDKIPEILEVEQIMDTETGLELTEENVENVLSEIRPYLVGTGGGILELVQIKDYVVKVRLSGPAAGVTTVRVALTQKLRDKIPAIAAVQLID*

>Glyma15g17580.2   sequence type=predicted peptide   gene model=Glyma15g17580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGGALLTPTTQSLKATRTIAMLYPTHRLLSLKNPVSNTRGFSSKENIFIRGQQINIKQFFGLISGHSPRNKAGGVVSPRCGLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSAMTLKMGIETRLRDKIPEILEVEQIMDTETGLELTEENVENVGGTSCIVSSISIISLAFWNFDFKYEVKAK*

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