Report for Sequence Feature Glyma15g17580
Feature Type: gene_model
Chromosome: Gm15
Start: 13962453
stop: 13964555
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g17580
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G25910 AT
Annotation by Michelle Graham. TAIR10: NFU domain protein 3 | chr4:13164128-13165094 FORWARD LENGTH=236
SoyBase E_val: 1.00E-92 ISS
GO:0009658 GO-bp
Annotation by Michelle Graham. GO Biological Process: chloroplast organization
SoyBase N/A ISS
GO:0016226 GO-bp
Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0005198 GO-mf
Annotation by Michelle Graham. GO Molecular Function: structural molecule activity
SoyBase N/A ISS
GO:0005506 GO-mf
Annotation by Michelle Graham. GO Molecular Function: iron ion binding
SoyBase N/A ISS
GO:0051536 GO-mf
Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding
SoyBase N/A ISS
PTHR11178 Panther
IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED
JGI ISS
PF01106 PFAM
NifU-like domain
JGI ISS
UniRef100_G7IN05 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: NifU-like protein n=2 Tax=Medicago truncatula RepID=G7IN05_MEDTR
SoyBase E_val: 9.00E-135 ISS
UniRef100_I1MGZ6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGZ6_SOYBN
SoyBase E_val: 4.00E-168 ISS
Expression Patterns of Glyma15g17580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g17580
Paralog Evidence Comments
Glyma09g06300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g17580 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g163100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g17580
Transcripts of Glyma15g17580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g17580.2 sequence type=transcript gene model=Glyma15g17580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ACAAACTTTAGGTGACTTTATTTTATTTTTTCTTTTATCATCACAAAGAATCAATGTCAGCCAATGAAGAAACGGTAGCTATCAGCATCTCTCTTGCTGCTACTAATATCAGAACTGAACTTTATCATGAAACCAAAAACGAGACAACATTTTATATAAACCAAAATAATTTCAGTTTCAGGCTGTTGGTAATATTCTTATGGTAGTTTTCTGGGTTTCCCACTCACACTCAGATGTTGGGTGGTGCACTTTTAACCCCAACAACTCAAAGCCTCAAGGCAACAAGAACAATTGCAATGCTTTATCCAACTCATAGATTATTGTCTCTTAAGAACCCAGTATCAAATACGAGAGGATTTTCATCAAAAGAGAATATTTTTATCAGAGGTCAACAAATCAACATTAAACAATTTTTTGGCCTTATCTCGGGTCATTCTCCACGAAACAAAGCAGGAGGAGTTGTTTCCCCCAGGTGTGGCCTGCCACTGACAGAAGAGAATGTGGAGAAGGTTTTAGATGAGGTAAGGCCTGGCTTGATGGCTGATGGAGGGAATGTGGCATTACATGAGATAGATGGTCTTGTTGTTGTCCTCAAGCTACAAGGGGCATGTGGATCATGTCCTAGCTCAGCTATGACATTGAAAATGGGAATTGAAACTCGCCTCCGGGATAAGATTCCAGAAATCTTGGAAGTGGAGCAGATAATGGACACTGAGACCGGTCTCGAGTTAACCGAAGAAAATGTTGAAAATGTAGGGGGAACTTCTTGCATCGTTTCTAGCATTTCCATAATTTCATTGGCCTTTTGGAATTTTGATTTTAAGTATGAGGTAAAAGCTAAGTGATCTGATTAAAATGTTTTTCTTTATGTATCATAGTCCTCAGCTTGACAAGGAATGATTGGTGTATTATGCAAAACCGTGATGAAATTCTTACAGCTTCTATA
Coding sequences of Glyma15g17580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g17580.1 sequence type=CDS gene model=Glyma15g17580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTGGGTGGTGCACTTTTAACCCCAACAACTCAAAGCCTCAAGGCAACAAGAACAATTGCAATGCTTTATCCAACTCATAGATTATTGTCTCTTAAGAACCCAGTATCAAATACGAGAGGATTTTCATCAAAAGAGAATATTTTTATCAGAGGTCAACAAATCAACATTAAACAATTTTTTGGCCTTATCTCGGGTCATTCTCCACGAAACAAAGCAGGAGGAGTTGTTTCCCCCAGGTGTGGCCTGCCACTGACAGAAGAGAATGTGGAGAAGGTTTTAGATGAGGTAAGGCCTGGCTTGATGGCTGATGGAGGGAATGTGGCATTACATGAGATAGATGGTCTTGTTGTTGTCCTCAAGCTACAAGGGGCATGTGGATCATGTCCTAGCTCAGCTATGACATTGAAAATGGGAATTGAAACTCGCCTCCGGGATAAGATTCCAGAAATCTTGGAAGTGGAGCAGATAATGGACACTGAGACCGGTCTCGAGTTAACCGAAGAAAATGTTGAAAATGTTCTTTCTGAAATTAGACCATACCTTGTTGGCACTGGGGGAGGAATATTAGAGCTTGTTCAGATAAAGGATTATGTTGTCAAAGTTCGGCTAAGTGGACCTGCAGCTGGGGTTACGACAGTTCGTGTTGCCTTAACACAGAAGCTGAGAGATAAGATACCTGCTATTGCAGCTGTGCAACTAATAGACTGA
>Glyma15g17580.2 sequence type=CDS gene model=Glyma15g17580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTGGGTGGTGCACTTTTAACCCCAACAACTCAAAGCCTCAAGGCAACAAGAACAATTGCAATGCTTTATCCAACTCATAGATTATTGTCTCTTAAGAACCCAGTATCAAATACGAGAGGATTTTCATCAAAAGAGAATATTTTTATCAGAGGTCAACAAATCAACATTAAACAATTTTTTGGCCTTATCTCGGGTCATTCTCCACGAAACAAAGCAGGAGGAGTTGTTTCCCCCAGGTGTGGCCTGCCACTGACAGAAGAGAATGTGGAGAAGGTTTTAGATGAGGTAAGGCCTGGCTTGATGGCTGATGGAGGGAATGTGGCATTACATGAGATAGATGGTCTTGTTGTTGTCCTCAAGCTACAAGGGGCATGTGGATCATGTCCTAGCTCAGCTATGACATTGAAAATGGGAATTGAAACTCGCCTCCGGGATAAGATTCCAGAAATCTTGGAAGTGGAGCAGATAATGGACACTGAGACCGGTCTCGAGTTAACCGAAGAAAATGTTGAAAATGTAGGGGGAACTTCTTGCATCGTTTCTAGCATTTCCATAATTTCATTGGCCTTTTGGAATTTTGATTTTAAGTATGAGGTAAAAGCTAAGTGA
Predicted protein sequences of Glyma15g17580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g17580.1 sequence type=predicted peptide gene model=Glyma15g17580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLGGALLTPTTQSLKATRTIAMLYPTHRLLSLKNPVSNTRGFSSKENIFIRGQQINIKQFFGLISGHSPRNKAGGVVSPRCGLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSAMTLKMGIETRLRDKIPEILEVEQIMDTETGLELTEENVENVLSEIRPYLVGTGGGILELVQIKDYVVKVRLSGPAAGVTTVRVALTQKLRDKIPAIAAVQLID*
>Glyma15g17580.2 sequence type=predicted peptide gene model=Glyma15g17580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLGGALLTPTTQSLKATRTIAMLYPTHRLLSLKNPVSNTRGFSSKENIFIRGQQINIKQFFGLISGHSPRNKAGGVVSPRCGLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSAMTLKMGIETRLRDKIPEILEVEQIMDTETGLELTEENVENVGGTSCIVSSISIISLAFWNFDFKYEVKAK*