SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G21065 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0047 (InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins in 1137 species: Archae - 215; Bacteria - 2154; Metazoa - 42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes - 1191 (source: NCBI BLink). | chr1:7374210-7375644 FORWARD LENGTH=217 | SoyBase | E_val: 4.00E-37 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| KOG3267 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PF01894 | PFAM | Uncharacterised protein family UPF0047 | JGI | ISS | |
| UniRef100_I1MGY0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGY0_SOYBN | SoyBase | E_val: 9.00E-76 | ISS |
| UniRef100_UPI00026CFD7D | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: hypothetical protein PpisJ2_00960 n=1 Tax=Pseudoalteromonas piscicida JCM 20779 RepID=UPI00026CFD7D | SoyBase | E_val: 2.00E-14 | ISS |
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Glyma15g17345 not represented in the dataset |
Glyma15g17345 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g17345.1 sequence type=CDS gene model=Glyma15g17345 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAGTCTCCTCAATCTGTTTACCAGCTAAGGTTCCAGTTCGCGTGAAGTCACTGCACACGAACCCAGCAACCGTAAACGACCCCACTTCCACGGCCAAGGTGGCTGCTCCTAAGTGGGCCCAGAAGACAATAACTTTGCCTCCCCTTAAACGTGGTTGTCATTTAATCACTTCTAAGATAGTGAAAGAAGTTCGGCAAGAATTGTCTGAATACCAGTGTGGCCTGGCCCATCTCTTCTGGCCAGATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCATGATACCCATTTCAAATGGAAAGCTTAATATGGGGACATGGCAGGCTGAGCGCAGCAAGACTAGTCCAGTGGTGGCCGGAATCGGCAACGGCGGCATCTCCAACATTTGGCGGCGTCGAGGACGACAAATCGGAGCGCAACAAGCGTATCAAAATACCAGTGTTGTTGCTCTGCTGACCGGAGGCAACAGCCTTGGCCATTGTGACCGCCCTGAGAGTCTCCCTTTGCTTAACAACCTTCATTCCCAAGTCCACCACGCTCTCATCATCGTCCCTCGGCCTCTACTCAACCACGACTGTGTCCTGCAGCATCGGCAGCGCCATCATCAGCTTCTTTTTCTTCTTCCTTTCCGATGCAGTCACCAGAAACCACCGTTGGCAGCTGAACAAGAGCAGAGGTTTTCGGGAGAAGCTGTTGCAAGAGAGAGAATAGTGAGAGAATGA
>Glyma15g17345.1 sequence type=predicted peptide gene model=Glyma15g17345 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQVSSICLPAKVPVRVKSLHTNPATVNDPTSTAKVAAPKWAQKTITLPPLKRGCHLITSKIVKEVRQELSEYQCGLAHLFWPDDMPAHIKSSMFGCALMIPISNGKLNMGTWQAERSKTSPVVAGIGNGGISNIWRRRGRQIGAQQAYQNTSVVALLTGGNSLGHCDRPESLPLLNNLHSQVHHALIIVPRPLLNHDCVLQHRQRHHQLLFLLPFRCSHQKPPLAAEQEQRFSGEAVARERIVRE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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