Report for Sequence Feature Glyma15g17320
Feature Type: gene_model
Chromosome: Gm15
Start: 13688479
stop: 13690635
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g17320
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G54070 AT
Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein | chr3:20021330-20023603 REVERSE LENGTH=574
SoyBase E_val: 1.00E-44 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
UniRef100_B9RU14 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RU14_RICCO
SoyBase E_val: 1.00E-49 ISS
UniRef100_I1MGX7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MGX7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g17320
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g17320
Paralog Evidence Comments
Glyma09g06085 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g17320 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma15g17320
Coding sequences of Glyma15g17320
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g17320.1 sequence type=CDS gene model=Glyma15g17320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTATATAGAGTTGCATTGAGAGGTGATTGGGAGAAGGCCAATGAGTTCCTAAATTTGCATCCTGGTGCGGAGAATGCCAGGACTTCAAGAGGGTGGGAAACAGCTCTTCATATTTCAGCTGGGGCTCGATGCACCAAATTTGTGGAGGAGTTGGTCAAAAGAATGAAAACAACAGACTTGGAAATTCAAAATAAAGACAACAATACTGCACTTTGTTTTGCTGTTGCATTTGGGGTTACCAAAATAGCAAAGCTGATGCTACATTACTGGGCCAAAGGGACATACATGGTTTGGTATCTCTATTGGGTGACCAATCATGAGGTTCTAAAAACAGAAGACTACTTTAGCCTATTGATTGCTGCTATATCTACAGATTTATATGATTTTGCCTTACATGTACTTGAGTGTCAACCACAATTAGCAACTTATCATGGTTTGAATGGGGAGACTGCTTTACACGTAGTGCCAGGATTTGAAGCAGTTCAGAAGAAAAAGACATTGAATGCACAAGCTTTAAAGTTAGTGCAATGTCTTCGGGAACTAATAGTGTCTTCAGATGAAATACAACATGGAGACTTAATTAAAAGCACTTTGTCACGGCCCCTATTTATTGCTGCTGAATCTGGGATACCTGAGATTGAGTCCTTTTCACATTGCAATCATTTATCGTCAGGAGAAAAAATATTTAACCTGATTTATGACATAGAGGCGCATAAGGATCTTATAACTTCTTACAGAGACAATAACAATCACAACATACTGCATTTGGCTGGAAAATTGGCCCCTTCAGATCAACTTCATGTTGTATCTGGTGCAGCCCTGCAGATGCAAAGGGAATTATTGTGGTTCAAGGAGGTGGAAAAGATCATACAACCTCTATTCAAAGAGATTAAGGATTCTGAAGGTAGGACACCTCAAATGTTATTTACTGAGGAACACAAGGGTTTAGCCAAAGGAGAGAAGTGGCTGAAGAACACTGCTTCATCATGCATGCTAGTTGCAACACTTTTATCCTTCTCCCTTTTCCCTACACCTCAACCCTTCTCCCTTCCT
Predicted protein sequences of Glyma15g17320
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g17320.1 sequence type=predicted peptide gene model=Glyma15g17320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
LYRVALRGDWEKANEFLNLHPGAENARTSRGWETALHISAGARCTKFVEELVKRMKTTDLEIQNKDNNTALCFAVAFGVTKIAKLMLHYWAKGTYMVWYLYWVTNHEVLKTEDYFSLLIAAISTDLYDFALHVLECQPQLATYHGLNGETALHVVPGFEAVQKKKTLNAQALKLVQCLRELIVSSDEIQHGDLIKSTLSRPLFIAAESGIPEIESFSHCNHLSSGEKIFNLIYDIEAHKDLITSYRDNNNHNILHLAGKLAPSDQLHVVSGAALQMQRELLWFKEVEKIIQPLFKEIKDSEGRTPQMLFTEEHKGLAKGEKWLKNTASSCMLVATLLSFSLFPTPQPFSLP
SoyBase
SoyBase transitions to NEW site on 10/1/2024
