Glyma15g16990 - SoyBase

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Report for Sequence Feature Glyma15g16990

Feature Type:	gene_model
Chromosome:	Gm15
Start:	13234406
stop:	13235609
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g16990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF05678	PFAM	VQ motif	JGI		ISS
UniRef100_I1MGV4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGV4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I6ZTV0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: VQ motif-containing protein n=1 Tax=Phaseolus vulgaris RepID=I6ZTV0_PHAVU	SoyBase	E_val: 5.00E-08	ISS

Expression Patterns of Glyma15g16990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g16990

Paralog	Evidence	Comments
Glyma09g05700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g16990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g158200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g16990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g16990

Limit To All Plant Sequences

>Glyma15g16990.1   sequence type=CDS   gene model=Glyma15g16990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGATATGACCATGGCTGCCATTACTGATCAATGGATGCAGTTCTATCAACAACCTCTAATGGATAGCCATGGCCATGATCATCATGCTTTGGCACCAATTTCCACAGAATTAGGCTTCTCTGATGCAACCGTGACTACGACAACTAGTTCTCCCACCCCCACCATGCCATCATCAGAGAGCAATAGCATCTTGAGCCAATTGAGTCCAAAGGGTAATGTGTCCAAACCAATAAGAAGAAGGTCTAGAGCCTCTAAGAAAACCCCAACCACACTCCTCAATGCCAACACCACCAATTTTAGAGCATTAGTACAACAATTCACAGGGTGTCATAGCACAACCATGCCAACACTAGGGGTCCAAAAGGGCCCTATTACCTTGAATTTCCAACAAGGAAATAGTAGTGGACAAAAGGTTCACCACAACACAAGTAGTAGGGTAGTGCTACCATTTAGTGGCAGAAGCCACAACAACAGCAACAGCAACAACAACCAGGTTCATCAAGTGCCTTCACCGTTTCCAAATGGGCAGAAGCAAGAAGATGAAGAACAACGACAACTGCCTCAGCAGAGTGGTTACTCTTTTGATTATGTGAAGAACAGTGGTTTTCTTCCAAGTTCGGGTAACTCAATAAGGCCTACCACTACTAGCATGGATCATGTCTCTGATGGTTTGCTCTTGGATAATGATTTTAACTTGGCTGATCTAACTGTTAATTGCTTCCCCAATGATACCTTTTATAAGAGTGAATTATAG

Predicted protein sequences of Glyma15g16990

Limit To All Plant Sequences

>Glyma15g16990.1   sequence type=predicted peptide   gene model=Glyma15g16990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRDMTMAAITDQWMQFYQQPLMDSHGHDHHALAPISTELGFSDATVTTTTSSPTPTMPSSESNSILSQLSPKGNVSKPIRRRSRASKKTPTTLLNANTTNFRALVQQFTGCHSTTMPTLGVQKGPITLNFQQGNSSGQKVHHNTSSRVVLPFSGRSHNNSNSNNNQVHQVPSPFPNGQKQEDEEQRQLPQQSGYSFDYVKNSGFLPSSGNSIRPTTTSMDHVSDGLLLDNDFNLADLTVNCFPNDTFYKSEL*

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