Glyma15g16915 - SoyBase

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Report for Sequence Feature Glyma15g16915

Feature Type:	gene_model
Chromosome:	Gm15
Start:	13171301
stop:	13171799
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g16915

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G27160	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S21 family protein \| chr3:10017531-10018854 FORWARD LENGTH=183	SoyBase	E_val: 7.00E-17	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PF01165	PFAM	Ribosomal protein S21	JGI		ISS
UniRef100_G7JMN6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 30S ribosomal protein S21 n=1 Tax=Medicago truncatula RepID=G7JMN6_MEDTR	SoyBase	E_val: 2.00E-23	ISS
UniRef100_I1MGU7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MGU7_SOYBN	SoyBase	E_val: 1.00E-50	ISS

Expression Patterns of Glyma15g16915

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g16915 not represented in the dataset	Glyma15g16915 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g16915 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g157200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g16915

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g16915

Limit To All Plant Sequences

>Glyma15g16915.1   sequence type=CDS   gene model=Glyma15g16915   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCGTGGTGGGCGAGGACGAGCCCGAGGACAGAATCATCAACCCCTTTAAGAAGGAGATCCTCAAAGCCGGTGTGCTTCAGGAGTGCAAACGCAGAAGGTTCTCTGAGAACAAAGACGACAAGATCAAGAGGAAGGCCCGCGAAGCTTCTAGAAGGAACCGAAAGAGAAGCCACAATCAAGAGCTTGGCCGGGCACAGAATAAACACGATTCTGAAAAGAAGAAAAAGGATGCTGCTCATGATGATATTGATGATTGGGAACTTCCACATGTAGGTATTCTATATACTTGA

Predicted protein sequences of Glyma15g16915

Limit To All Plant Sequences

>Glyma15g16915.1   sequence type=predicted peptide   gene model=Glyma15g16915   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IVVGEDEPEDRIINPFKKEILKAGVLQECKRRRFSENKDDKIKRKAREASRRNRKRSHNQELGRAQNKHDSEKKKKDAAHDDIDDWELPHVGILYT*

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