Glyma15g16900 - SoyBase

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Report for Sequence Feature Glyma15g16900

Feature Type:	gene_model
Chromosome:	Gm15
Start:	13160382
stop:	13166764
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g16900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G44030	AT	Annotation by Michelle Graham. TAIR10: cellulose synthase A4 \| chr5:17714713-17719564 FORWARD LENGTH=1049	SoyBase	E_val: 0	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0009834	GO-bp	Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0042546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016759	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cellulose synthase activity	SoyBase	N/A	ISS
GO:0016760	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cellulose synthase (UDP-forming) activity	SoyBase	N/A	ISS
PTHR13301	Panther	X-BOX TRANSCRIPTION FACTOR-RELATED	JGI		ISS
PTHR13301:SF23	Panther		JGI		ISS
PF03552	PFAM	Cellulose synthase	JGI		ISS
UniRef100_G7INF0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cellulose synthase n=1 Tax=Medicago truncatula RepID=G7INF0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MGU6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGU6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g16900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g16900

Paralog	Evidence	Comments
Glyma09g05630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g16900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g157100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g16900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g16900

Limit To All Plant Sequences

>Glyma15g16900.1   sequence type=CDS   gene model=Glyma15g16900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGCTTGATCACCAGTTCGAATTCTCATTTCTCGCGTGACTCCAATGAGCATCAGGCTCCTCCTACCCGGCAAGCTTCGTCGAAAACTACGTGTCGAGTTTGTGGCGATGAGATTGGATACATGGAAAATGGGGAGCTGTTTGTGGCTTGTCATGTGTGTAGATTTCCTGTTTGTCGACCGTGTTATGAATATGAGAGGAGTGAAGGGAACCAGAGCTGTCCACAATGCAACACTCGCTATAAGCGCCACAAAGGTTGTCCCAGAGTGGCTGGAGATGAAGAGGACAACATTGATGCAGATGATTTTGATGATCAGTTTCCGGTTGAGAATCATCGTGAAGATCTAGATGGGCAACATGATGTTAATCATGTGGAAAATGGGGACTACAATCAAGAGAAGTTGCATCCCAGTGGTCAAGCTTTCTCTTCAGCTGGGAGTGTTGCGGGCAAGGATTTCGAAGGGGACAAAGATTTCTACAGCAATGCAGAATGGCAAGAAAGAGTAGAGAAATGGAAAGTCAGGCAAGAAAAGAGAGGTCTTCTAAACAAAGAAGATGGAAAAGAAGACCAAGCAGAAGAAGATGATTACCTTTTGGCTGAAGCTAGACAACCATTGTGGCGCAAGGTTCCGATATCTTCAAGCTTAATCAATCCATATCGCATTGTGATTGTGATGAGGCTGGTCATCCTTTGTTTCTTCTTCCGATTCCGTATCTTAACTCCAGCAAATGATGCATATCCCTTGTGGCTAATCTCTGTGATATGTGAGATATGGTTTGCACTGTCATGGATTCTTGATCAGTTCCCCAAGTGGTTCCCCATCGCACGCGAGACTTACTTGGACCGTTTGGCCTTGAGGTTTGAGCGTGAAGGGGAGACAAACCAACTAGCTCCAGTTGATTTCTTTGTGAGTACAGTGGACCCTTTGAAGGAACCTCCCATTATAACAGCCAACACTGTCCTTTCAATCCTCTCTGTTGACTATCCCGTTGACAAAGTCAGCTGCTATGTCTCAGATGATGGTGCATCTATGCTTCTGTTTGATTCCTTGGCAGAAACCGCTGAATTTGCAAGAAGATGGGTTCCCTTTTGCAAGAAGTATAACATAGAGCCAAGGGCTCCTGAGTTTTACTTTTCTCAGAAAATTGATTACTTGAAGGACAAGGTGCAGCCTACATTTGTGAAGGAAAGAAGGGCAATGAAGCGGGAATATGAAGAATTTAAGGTGAAAATTAATTCTTTGGTGGCAAAGGCTCAGAAGAAACCTGAGGAGGGGTGGGTGATGCAGGATGGAACTCCATGGCCAGGGAACAACACTCGTGATCATCCAGGAATGATTCAGGTATATTTAGGAAGTGCCGGTGCGCTGGACGTGGAAGGCAAGGAACTTCCTAAACTTGTCTATATTTCACGTGAAAAACGTCCCGGCTATCCTCACCACAAGAAAGCAGGTGCCATGAATGCTTTGGTTCGAGTTTCTGCTGTGCTTACAAATGCACCATTCATGTTGAATCTGGATTGTGATCACTACGTCAATAACAGCAAGGCAGTAAGAGAGGCCATGTGCTTTTTAATGGACCCCAACCTAGGGAAGAAGCTGTGTTATGTCCAATTTCCACAAAGATTTGATGGTATTGATCGCCACGATAGATATGCTAACCGAAACACAGTGTTCTTTGATATCAATATGAAAGGGCTTGATGGGATTCAAGGTCCAGTATATGTTGGTACTGGAACTGTGTTCAACAGGCAGGCATTGTATGGCTATGATCCACCAGTATCTGAGAAAAGGCCAAAGATGACATGTGACTGTTGGCCATCATGGTGTTGCTGCTGCTGTGGTGGTTCAAGGAAGTCCAAGTCAAAAAAGAAATCAGGAAAAGGTCTCTTCAGTGTGTTCTCCAAGAACAAGAACAAGAAGAAAATGATGGGGAAAGACTATGTTAGAAAAGGGTCAGGGTCCATGTTTGATCTTGAAGAGATTGAAGAAGGGCTAGAAGGGTATGAGGATCTAGAGAAATCATCCCTCATGTCCCAGAAAAGTTTTGAGAAGCGATTTGGGCAGTCACCAGTTTTCATTGCTTCCACCTTGATGGAAAATGGAGGACTTCCTGAAGGCACAAATAGCCAATCATTGGTCAAGGAGGCCATTCATGTTATAAGCTGTGGCTACGAAGAGAAGACTGAATGGGGCAAAGAGATAAATAAGCTAATACATTGTAGGTTTAAACAATTTTTGGTTGCAGTGAAAGAAAATTTCCTTAGTCGCCATTGCCCCTTGAGGTATGGCTATGGAGGAAAACTTAAGTACCTACAGAGGATGGCTTACACTAACACCATTGTTTATCCATGGACTTCCATCCCTCTGCTTGCATACTGCACAATTCCAGCTGTGTGTCTCCTGACTGGAAAGTTCATCATCCCCACACTGAACAACCTTGCTAGCATTTGGTTTATGGCTCTATTTATCTCCATCATTTTAACAAGCGTGCTTGAGCTCCGATGGAGTGGTGTTACCATCGAAGCTCTATGGCGTAACGAGCAATTCTGGGTCATTGGAGGTGTTTCTGCTCACCTTTTTGCTGTATTCCAAGGCCTCCTCAAAGTTCTTGGTGGAGTAGACACCAACTTCACTGTCACAGCAAAAGCAGCAGAGGACACTGAATTTGGAGAGCTCTATCTCTTCAAGTGGACCACTCTTCTCATCCCTCCAACCACTCTCATAATCTTGAACATCGTTGGAGTCGTGGCCGGAGTCTCTGATGCCATCAACAATGGATATGGCTCATGGGGACCTTTGTTTGGGAAGCTGTTCTTTGCCTTTTGGGTCATTGTTCACTTGTACCCTTTCCTCAAAGGTCTCATGGGAAAGCAAAACAGGACTCCTACCATTGTAGTTCTGTGGTCAATTCTTCTAGCATCTATTTTCTCATTGATTTGGGTCAGGATTGATCCCTTCTTGCCCAAGCAAACTGGTCCAGTGCTCAAACAATGTGGGGTGGAATGCTAA

Predicted protein sequences of Glyma15g16900

Limit To All Plant Sequences

>Glyma15g16900.1   sequence type=predicted peptide   gene model=Glyma15g16900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGLITSSNSHFSRDSNEHQAPPTRQASSKTTCRVCGDEIGYMENGELFVACHVCRFPVCRPCYEYERSEGNQSCPQCNTRYKRHKGCPRVAGDEEDNIDADDFDDQFPVENHREDLDGQHDVNHVENGDYNQEKLHPSGQAFSSAGSVAGKDFEGDKDFYSNAEWQERVEKWKVRQEKRGLLNKEDGKEDQAEEDDYLLAEARQPLWRKVPISSSLINPYRIVIVMRLVILCFFFRFRILTPANDAYPLWLISVICEIWFALSWILDQFPKWFPIARETYLDRLALRFEREGETNQLAPVDFFVSTVDPLKEPPIITANTVLSILSVDYPVDKVSCYVSDDGASMLLFDSLAETAEFARRWVPFCKKYNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVKINSLVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPKLVYISREKRPGYPHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAVREAMCFLMDPNLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKSGKGLFSVFSKNKNKKKMMGKDYVRKGSGSMFDLEEIEEGLEGYEDLEKSSLMSQKSFEKRFGQSPVFIASTLMENGGLPEGTNSQSLVKEAIHVISCGYEEKTEWGKEINKLIHCRFKQFLVAVKENFLSRHCPLRYGYGGKLKYLQRMAYTNTIVYPWTSIPLLAYCTIPAVCLLTGKFIIPTLNNLASIWFMALFISIILTSVLELRWSGVTIEALWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAAEDTEFGELYLFKWTTLLIPPTTLIILNIVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPVLKQCGVEC*

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