Glyma15g16851 - SoyBase

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Report for Sequence Feature Glyma15g16851

Feature Type:	gene_model
Chromosome:	Gm15
Start:	13112785
stop:	13116665
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g16851

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G44730	AT	Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr5:18045588-18046519 REVERSE LENGTH=255	SoyBase	E_val: 6.00E-148	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008967	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoglycolate phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG3085	KOG	Predicted hydrolase (HAD superfamily)	JGI		ISS
PTHR12725	Panther	HALOACID DEHALOGENASE-LIKE HYDROLASE	JGI		ISS
PTHR12725:SF5	Panther	HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN CONTAINING 3	JGI		ISS
PF00702	PFAM	haloacid dehalogenase-like hydrolase	JGI		ISS
UniRef100_C6TAQ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TAQ9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7INC4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Haloacid dehalogenase-like hydrolase domain-containing protein n=1 Tax=Medicago truncatula RepID=G7INC4_MEDTR	SoyBase	E_val: 1.00E-172	ISS

Expression Patterns of Glyma15g16851

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g16851 not represented in the dataset	Glyma15g16851 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g16851

Paralog	Evidence	Comments
Glyma09g05590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g16851 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g156700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g16851

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g16851

Limit To All Plant Sequences

>Glyma15g16851.2   sequence type=transcript   gene model=Glyma15g16851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGAGAAATTTTATTAAATATAACAAATCTGGGGTTTCGATGATTTCCATTTATACACACAAAACCATCCTTGGGTTGGAGAAGAAGGAAACAACATAACCGTCCAAAGCTTCTCTCTCTTCCATTTCCCACCTATAAAACTAGATGGAAAAAATACACACTGTGCTTCTCATGATGATAGTGTAGCTGAAGCTCCTTCTGCAGCAGCATTTATGATTTGGACACAAAAAAGTTCCAAACTTTTCAGTTCTCTGAGTTTCTGTCTTTGTAGCTGAGGTATGGAAATAATTTCATCTGGCTTCATAAACACAGCATCTTTCAAGGACAGTATGGTACTTATCAATTTTGAAGGAGTTCAATACTTTGCCCTATTAGTTGGTTCTGTGAAATTTGTATTGGCATTGCTACATCAGAAATTCTTCCGAACAATCCCATAATCAACCATGTCATTATTGGCTAAACTACGTTGTGTCACTATAGATGTCACTGGTACCCTAATGGCTTACAAAGGGGAGCTCGGTGACTATTATTGCATGGCAGCCAAAGCTGCAGGCAAACCATGCCCAGACTACCAACGTATGCACGAGGGTTTTAAGCTTGCATATAAGGAAATGGCAAAGAATTATCCATGTTTTGGGCATGCAGCCAAAATGCCAAACATTGTGTGGTGGAAAACCTGTGTGCGAGATTCTTTTGTCAGGGCTGGATATGAATATGATGAAGAGACATTTGAGAAAATCTTCAGACGTATATATGCATCCTTTGGTTCATCTGCTCCGTATACTGTATTTCCAGACTCCCAACCATTTCTTAGATGGCTTCGTGGAGAGGGTCTCAAAGTTGGTATTGTGAGCAATGCTGAGTATCGATATCAAGATGTAATTCTTCCAGCTTTGGGTTTAAACGAGGGATCTGAGTGGGATTTTGGCGTGTTTTCCGGCCTTGAAGGTGTCGAGAAACCAAACCCGAAAATTTACGAGATTGCACTTGAGAGGGCTGGAAACATTGCACCTGAAGAAGCTTTGCACATTGGGGACAGCATGCGCAAAGACTATGAGCCAGCTAAGAGCATAGGGATGCATGCACTATTGTTGGATAGGTTTAAGACCCCAGATGCTGTGGAATGGAGGAAATCTGGGGCAGTTGTTCTTCCTGATTTATTGGCAGCAAAAGAATGGCTGTCTTCAGATAAGTCAAATTGCTAGAGATCAGATAATGGCTCTATCTTTGCTCAAATGTATTTAAGTATCATCTTCACCCCTCAAATAGTATTACCGTGGCTTGTGATATTCTACCATTACATATGTGGCTGAATATTTCTCTCTAGAGCCATACTTGAGAATCAGATGGCTAAGAGTTAGATGTAGCTCAAATCCAACTTTGCAATACAAATATATTCGAAAGTTACTCTCTTTTCCATAGGGTTCTGTGATTTTGCCCGGTTACAAGCATATCAAATTTGGATACTTTTATAATGGGGTTGTAGATGTTGGGTTACTTGGTAGCACCTAGCTCAAAATTTGACTCAGTTCCTTTTATTTTCC

>Glyma15g16851.3   sequence type=transcript   gene model=Glyma15g16851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGAGAAATTTTATTAAATATAACAAATCTGGGGTTTCGATGATTTCCATTTATACACACAAAACCATCCTTGGGTTGGAGAAGAAGGAAACAACATAACCGTCCAAAGCTTCTCTCTCTTCCATTTCCCACCTATAAAACTAGATGGAAAAAATACACACTGTGCTTCTCATGATGATAGTGTAGCTGAAGCTCCTTCTGCAGCAGCATTTATGATTTGGACACAAAAAAGTTCCAAACTTTTCAGTTCTCTGAGTTTCTGACTTATCAATTTTGAAGGAGTTCAATACTTTGCCCTATTAGTTGGTTCTGTGAAATTTGTATTGGCATTGCTACATCAGAAATTCTTCCGAACAATCCCATAATCAACCATGTCATTATTGGCTAAACTACGTTGTGTCACTATAGATGTCACTGGTACCCTAATGGCTTACAAAGGGGAGCTCGGTGACTATTATTGCATGGCAGCCAAAGCTGCAGGCAAACCATGCCCAGACTACCAACGTATGCACGAGGGTTTTAAGCTTGCATATAAGGAAATGGCAAAGAATTATCCATGTTTTGGGCATGCAGCCAAAATGCCAAACATTGTGTGGTGGAAAACCTGTGTGCGAGATTCTTTTGTCAGGGCTGGATATGAATATGATGAAGAGACATTTGAGAAAATCTTCAGACGTATATATGCATCCTTTGGTTCATCTGCTCCGTATACTGTATTTCCAGACTCCCAACCATTTCTTAGATGGCTTCGTGGAGAGGGTCTCAAAGTTGGTATTGTGAGCAATGCTGAGTATCGATATCAAGATGTAATTCTTCCAGCTTTGGGTTTAAACGAGGGATCTGAGTGGGATTTTGGCGTGTTTTCCGGCCTTGAAGGTGTCGAGAAACCAAACCCGAAAATTTACGAGATTGCACTTGAGAGGGCTGGAAACATTGCACCTGAAGAAGCTTTGCACATTGGGGACAGCATGCGCAAAGACTATGAGCCAGCTAAGAGCATAGGGATGCATGCACTATTGTTGGATAGGTTTAAGACCCCAGATGCTGTGGAATGGAGGAAATCTGGGGCAGTTGTTCTTCCTGATTTATTGGCAGCAAAAGAATGGCTGTCTTCAGATAAGTCAAATTGCTAGAGATCAGATAATGGCTCTATCTTTGCTCAAATGTATTTAAGTATCATCTTCACCCCTCAAATAGTATTACCGTGGCTTGTGATATTCTACCATTACATATGTGGCTGAATATTTCTCTCTAGAGCCATACTTGAGAATCAGATGGCTAAGAGTTAGATGTAGCTCAAATCCAACTTTGCAATACAAATATATTCGAAAGTTACTCTCTTTTCCATAGGGTTCTGTGATTTTGCCCGGTTACAAGCATATCAAATTTGGATACTTTTATAATGGGGTTGTAGATGTTGGGTTACTTGGTAGCACCTAGCTCAAAATTTGACTCAGTTCCTTTTATTTTCC

Coding sequences of Glyma15g16851

Limit To All Plant Sequences

>Glyma15g16851.1   sequence type=CDS   gene model=Glyma15g16851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATTATTGGCTAAACTACGTTGTGTCACTATAGATGTCACTGGTACCCTAATGGCTTACAAAGGGGAGCTCGGTGACTATTATTGCATGGCAGCCAAAGCTGCAGGCAAACCATGCCCAGACTACCAACGTATGCACGAGGGTTTTAAGCTTGCATATAAGGAAATGGCAAAGAATTATCCATGTTTTGGGCATGCAGCCAAAATGCCAAACATTGTGTGGTGGAAAACCTGTGTGCGAGATTCTTTTGTCAGGGCTGGATATGAATATGATGAAGAGACATTTGAGAAAATCTTCAGACGTATATATGCATCCTTTGGTTCATCTGCTCCGTATACTGTATTTCCAGACTCCCAACCATTTCTTAGATGGCTTCGTGGAGAGGGTCTCAAAGTTGGTATTGTGAGCAATGCTGAGTATCGATATCAAGATGTAATTCTTCCAGCTTTGGGTTTAAACGAGGGATCTGAGTGGGATTTTGGCGTGTTTTCCGGCCTTGAAGGTGTCGAGAAACCAAACCCGAAAATTTACGAGATTGCACTTGAGAGGGCTGGAAACATTGCACCTGAAGAAGCTTTGCACATTGGGGACAGCATGCGCAAAGACTATGAGCCAGCTAAGAGCATAGGGATGCATGCACTATTGTTGGATAGGTTTAAGACCCCAGATGCTGTGGAATGGAGGAAATCTGGGGCAGTTGTTCTTCCTGATTTATTGGCAGCAAAAGAATGGCTGTCTTCAGATAAGTCAAATTGCTAG

>Glyma15g16851.2   sequence type=CDS   gene model=Glyma15g16851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATTATTGGCTAAACTACGTTGTGTCACTATAGATGTCACTGGTACCCTAATGGCTTACAAAGGGGAGCTCGGTGACTATTATTGCATGGCAGCCAAAGCTGCAGGCAAACCATGCCCAGACTACCAACGTATGCACGAGGGTTTTAAGCTTGCATATAAGGAAATGGCAAAGAATTATCCATGTTTTGGGCATGCAGCCAAAATGCCAAACATTGTGTGGTGGAAAACCTGTGTGCGAGATTCTTTTGTCAGGGCTGGATATGAATATGATGAAGAGACATTTGAGAAAATCTTCAGACGTATATATGCATCCTTTGGTTCATCTGCTCCGTATACTGTATTTCCAGACTCCCAACCATTTCTTAGATGGCTTCGTGGAGAGGGTCTCAAAGTTGGTATTGTGAGCAATGCTGAGTATCGATATCAAGATGTAATTCTTCCAGCTTTGGGTTTAAACGAGGGATCTGAGTGGGATTTTGGCGTGTTTTCCGGCCTTGAAGGTGTCGAGAAACCAAACCCGAAAATTTACGAGATTGCACTTGAGAGGGCTGGAAACATTGCACCTGAAGAAGCTTTGCACATTGGGGACAGCATGCGCAAAGACTATGAGCCAGCTAAGAGCATAGGGATGCATGCACTATTGTTGGATAGGTTTAAGACCCCAGATGCTGTGGAATGGAGGAAATCTGGGGCAGTTGTTCTTCCTGATTTATTGGCAGCAAAAGAATGGCTGTCTTCAGATAAGTCAAATTGCTAG

>Glyma15g16851.3   sequence type=CDS   gene model=Glyma15g16851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATTATTGGCTAAACTACGTTGTGTCACTATAGATGTCACTGGTACCCTAATGGCTTACAAAGGGGAGCTCGGTGACTATTATTGCATGGCAGCCAAAGCTGCAGGCAAACCATGCCCAGACTACCAACGTATGCACGAGGGTTTTAAGCTTGCATATAAGGAAATGGCAAAGAATTATCCATGTTTTGGGCATGCAGCCAAAATGCCAAACATTGTGTGGTGGAAAACCTGTGTGCGAGATTCTTTTGTCAGGGCTGGATATGAATATGATGAAGAGACATTTGAGAAAATCTTCAGACGTATATATGCATCCTTTGGTTCATCTGCTCCGTATACTGTATTTCCAGACTCCCAACCATTTCTTAGATGGCTTCGTGGAGAGGGTCTCAAAGTTGGTATTGTGAGCAATGCTGAGTATCGATATCAAGATGTAATTCTTCCAGCTTTGGGTTTAAACGAGGGATCTGAGTGGGATTTTGGCGTGTTTTCCGGCCTTGAAGGTGTCGAGAAACCAAACCCGAAAATTTACGAGATTGCACTTGAGAGGGCTGGAAACATTGCACCTGAAGAAGCTTTGCACATTGGGGACAGCATGCGCAAAGACTATGAGCCAGCTAAGAGCATAGGGATGCATGCACTATTGTTGGATAGGTTTAAGACCCCAGATGCTGTGGAATGGAGGAAATCTGGGGCAGTTGTTCTTCCTGATTTATTGGCAGCAAAAGAATGGCTGTCTTCAGATAAGTCAAATTGCTAG

Predicted protein sequences of Glyma15g16851

Limit To All Plant Sequences

>Glyma15g16851.1   sequence type=predicted peptide   gene model=Glyma15g16851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLLAKLRCVTIDVTGTLMAYKGELGDYYCMAAKAAGKPCPDYQRMHEGFKLAYKEMAKNYPCFGHAAKMPNIVWWKTCVRDSFVRAGYEYDEETFEKIFRRIYASFGSSAPYTVFPDSQPFLRWLRGEGLKVGIVSNAEYRYQDVILPALGLNEGSEWDFGVFSGLEGVEKPNPKIYEIALERAGNIAPEEALHIGDSMRKDYEPAKSIGMHALLLDRFKTPDAVEWRKSGAVVLPDLLAAKEWLSSDKSNC*

>Glyma15g16851.2   sequence type=predicted peptide   gene model=Glyma15g16851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLLAKLRCVTIDVTGTLMAYKGELGDYYCMAAKAAGKPCPDYQRMHEGFKLAYKEMAKNYPCFGHAAKMPNIVWWKTCVRDSFVRAGYEYDEETFEKIFRRIYASFGSSAPYTVFPDSQPFLRWLRGEGLKVGIVSNAEYRYQDVILPALGLNEGSEWDFGVFSGLEGVEKPNPKIYEIALERAGNIAPEEALHIGDSMRKDYEPAKSIGMHALLLDRFKTPDAVEWRKSGAVVLPDLLAAKEWLSSDKSNC*

>Glyma15g16851.3   sequence type=predicted peptide   gene model=Glyma15g16851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLLAKLRCVTIDVTGTLMAYKGELGDYYCMAAKAAGKPCPDYQRMHEGFKLAYKEMAKNYPCFGHAAKMPNIVWWKTCVRDSFVRAGYEYDEETFEKIFRRIYASFGSSAPYTVFPDSQPFLRWLRGEGLKVGIVSNAEYRYQDVILPALGLNEGSEWDFGVFSGLEGVEKPNPKIYEIALERAGNIAPEEALHIGDSMRKDYEPAKSIGMHALLLDRFKTPDAVEWRKSGAVVLPDLLAAKEWLSSDKSNC*

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