Glyma15g16580 - SoyBase

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Report for Sequence Feature Glyma15g16580

Feature Type:	gene_model
Chromosome:	Gm15
Start:	12878458
stop:	12879863
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g16580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30840	AT	Annotation by Michelle Graham. TAIR10: purine permease 4 \| chr1:10974581-10975729 FORWARD LENGTH=382	SoyBase	E_val: 3.00E-130	ISS
GO:0006863	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleobase transport	SoyBase	N/A	ISS
GO:0015931	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound transport	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005345	GO-mf	Annotation by Michelle Graham. GO Molecular Function: purine nucleobase transmembrane transporter activity	SoyBase	N/A	ISS
KOG1443	KOG	Predicted integral membrane protein	JGI		ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
PF03151	PFAM	Triose-phosphate Transporter family	JGI		ISS
UniRef100_B9T6X2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Purine transporter, putative n=1 Tax=Ricinus communis RepID=B9T6X2_RICCO	SoyBase	E_val: 6.00E-156	ISS
UniRef100_UPI000233B324	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B324 related cluster n=1 Tax=unknown RepID=UPI000233B324	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g16580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g16580

Paralog	Evidence	Comments
Glyma09g05251	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g16580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g154800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g16580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g16580

Limit To All Plant Sequences

>Glyma15g16580.2   sequence type=CDS   gene model=Glyma15g16580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAAAAAAATGAGGTTACATAATCACTGTCCCCAACACATCACCATGAGTCCTTGTATTAAGATCAATACAAGTGAAATTGAATTCTTTGATCAATTAGAAGCTGGTGGAGAAGCATTAGCACATGCAGATCTAGTCTCTTCCATGGACAACACAACAATGCAGGTGCATGCAGATCAAAAGGGTAGCAGTAGCACTAAAAAGAGGTACATTAACATCAACATGCCCCTTTTTGTGATTAACTATGCATGTCTCTTTGTGGGTTCACTTTCTTCTAGTTTGCTCTCTAAGTACTATTTCACCCACAATGGTTCAAGTAGATGGGTTTCAACTTGGGTTCAAACCGCAGGATTTCCTCTTTTGATGATCCCAATTTGTGTTCCTTATCTCTTTAAATTCACCAAGAGGGTACCCTTCACTGATTTCACTCCAAGAATGTTGATTCTCTCAATTTCAATCGGTGTTATGTTAGGATTCAACAATCTTTTCTTCTCATGGGGAAATTCATACCTTCCCGTTTCAACCTCAGCCCTTTTGCTATCTTCCCAACTACTCTTCAACCTTCTCTTCTCTGTCATCATAGTGAAGCAAGAAATAACCTTTTCAAACGTGAATTGTGTGATCCTTCTCACCCTAAGTTCCATCCTCCTAGCCTTGGACTCTAGCCACGAGAGACCACAAGGGCTCACCCAAAAGAACTACTTCATTGGATTCTTTTGCACCATAGGCGCAGGCTTGATGTTTGCCTTGTACTTGCCACTGATGGAGAAGATTTACAAGAAGGTGAATTGCTACCAAATGGTGATGGAAATGCAAGTGATAATGGAGGCTGCAGCAACAGCATTGGCCATAGTTGGCATGACATGGGATGGTGGATTCTCTGAGATGAAGGTAGAGAGCCAAATGGTGTTTGACAAAGGAAGCAGAGTTTATTGGGTGACAGTGATGGGAAATGTGGTGACATGGCAGCTATGTTTCATGGGAACTGCAGGAATGGTGTTTCTGACATCTTCATTGACTGGGGGCATTTGCATGACATTTTTGTTGATCATGAATGTGTTAGGAGGGGTTGTGGTCTTCAGAGATGCATTTGGTGGAATCAAAGTTGTGTCCACTTTTCTCTGCATTTTGGGGTTCTGTTCTTATATTTGTGGCATCTACAAGTACAATCAAATGGGGGAACACAAATTAGCTCCAACCAGGAACAAGAATAGTAGTGATGATTCATCCACTGAGATGATCCACATTGTGAGTCGTTGA

Predicted protein sequences of Glyma15g16580

Limit To All Plant Sequences

>Glyma15g16580.2   sequence type=predicted peptide   gene model=Glyma15g16580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWKKMRLHNHCPQHITMSPCIKINTSEIEFFDQLEAGGEALAHADLVSSMDNTTMQVHADQKGSSSTKKRYININMPLFVINYACLFVGSLSSSLLSKYYFTHNGSSRWVSTWVQTAGFPLLMIPICVPYLFKFTKRVPFTDFTPRMLILSISIGVMLGFNNLFFSWGNSYLPVSTSALLLSSQLLFNLLFSVIIVKQEITFSNVNCVILLTLSSILLALDSSHERPQGLTQKNYFIGFFCTIGAGLMFALYLPLMEKIYKKVNCYQMVMEMQVIMEAAATALAIVGMTWDGGFSEMKVESQMVFDKGSRVYWVTVMGNVVTWQLCFMGTAGMVFLTSSLTGGICMTFLLIMNVLGGVVVFRDAFGGIKVVSTFLCILGFCSYICGIYKYNQMGEHKLAPTRNKNSSDDSSTEMIHIVSR*

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