SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G44635 | AT | Annotation by Michelle Graham. TAIR10: minichromosome maintenance (MCM2/3/5) family protein | chr5:18006431-18010542 REVERSE LENGTH=831 | SoyBase | E_val: 0 | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006268 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA unwinding involved in replication | SoyBase | N/A | ISS |
| GO:0006270 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication initiation | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0000790 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear chromatin | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008094 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity | SoyBase | N/A | ISS |
| KOG0480 | KOG | DNA replication licensing factor, MCM6 component | JGI | ISS | |
| PTHR11630 | Panther | DNA REPLICATION LICENSING FACTOR | JGI | ISS | |
| PTHR11630:SF43 | Panther | DNA REPLICATION LICENSING FACTOR MCM6 | JGI | ISS | |
| PF00493 | PFAM | MCM2/3/5 family | JGI | ISS | |
| UniRef100_I1MGS3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGS3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8H1A3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mini-chromosome maintenance protein MCM6 n=1 Tax=Pisum sativum RepID=Q8H1A3_PEA | SoyBase | E_val: 0 | ISS |
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Glyma15g16570 not represented in the dataset |
Glyma15g16570 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g05240 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g154900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g16570.1 sequence type=CDS gene model=Glyma15g16570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGCATACGGCGGCTTCATGGTCGACGAGAAAGCCGTTAGGGTTGAGAACGCTTTCCTTGATTTCCTCAAAAGCTTCAAGTCTAGTAGCCAGCGGAACGAACTTTATTACGAAGCGGAGATCGAATTGATGAAGAGCAATGAATCCAACACCATGTTCATCGATTTCGACCACGTCATCAGATTCAGCGACCTCCTCCAGCAAACCATCTCCGATGAATACTTGAGATTTGAACCTTATTTGAAGAACGCTTGCAAGCGGTTTGTTATGGATCTCAAGCCATCACTTGTGTCCGACGATAGCCCTGACAAGGACATCAATATTGCCTTCTATAACATGCCCATTGTTAAAAGGTTAAGGGAATTGGGTACATCAGAGATCGGAAGGCTTGTGTCTGTGACAGGAGTGGTGACGAGGACGAGTGAGGTTCGACCTGAACTTCTCCATGGGACTTTCAAGTGCCTGGAATGCGGTGGTGTTATAAAGAATGTTGAACAGCAATTCAAGTATACTGAGCCAACAATCTGCGCAAATGCGACCTGTAGCAATCGAACAAGGTGGGTACTGCTGCGCCAAGAGAGCAAATTTGCTGATTGGCAGAGGGTCAGAATGCAGGAGACGTCCAAAGAGATACCTGCAGGCTCTCTTCCTAGGTCATTGGACATTATTCTTCGTCATGAGATTGTGGAACATGCCAGAGCTGGTGACACGGTGATTTTCACTGGTACTGTAGTTGTTATACCTGACATAATGGCATTGGCATCTCCGGGAGAGAGATCAGAGTGCCGCCGTGATGCTTCTCAACGCAAGGGTTCTACAGCTGGAAATGAAGGTGTGAGTGGTCTTAAGGCTCTAGGAGTCAGAGACCTCAACTATCGTCTAGCTTTTATTGCCAACTCTGCTCAGATTTGTGATGGTAGAAGAGAAATAGACATCAGGAATAGAAAGAAGGATGTTGATGAAGACAATCAACAGTTTACTGATCAGGAACTGGAAGAAATTAAACGGATGAGGAGCACACCAGATTTTTTCACCAAACTTGTTGAAAGCATTGCTCCAACTGTTTTTGGTCATCCAGATATAAAGAGAGCTATCCTTCTTATGCTTTTGGGTGGTGTGCACAAATTTACTCATGAAGGCATCAACCTCAGAGGAGACATAAACGTTTGTGTTGTTGGAGATCCCAGCTGTGCAAAATCTCAATTTCTTAAGTATACTTCAGGCATAGTTCCAAGATCTGTGTATACATCTGGAAAATCATCATCTGCTGCTGGCTTGACTGCAACCGTTGCCAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCTTTGATGCTTGCAGACAATGGCATTTGCTGCATTGATGAATTTGACAAGATGGACATCAGAGATCAGGTTGCAATTCATGAGGCAATGGAACAGCAGACTATTAGTATCACAAAAGCAGGAATACAAGCAACACTTAATGCTCGTACTTCCATTCTTGCTGCTGCCAATCCTGCTGGGGGACGCTATGATAAATCTAAACCACTTAAGTACAATGTGGCCCTTCCACCAGCTATACTTTCAAGGTTTGATCTCGTATATGTTATGATTGACGACCCAGACGATCAGACAGACTACCACATAGCTCATCATATTGTGAGAGTTCATCAAAAGCGTGAAGGTGCTCTGGCTCCAGCATTCACTACAGCAGAACTGAAGCGTTATATAGCTTATGCAAAAACTCTTAAACCAAAGCTCTCGCCCGATGCCAGAAAACTATTGGTAGACTCTTATGTTGCTCTCCGTAGAGGTGATACAAATCCTGGGAGTAGGGTTGCATACCGTATGACAGTTAGGCAGTTGGAGGCATTAATCAGACTGTCAGAGGCCATTGCACGGTGTCATTTGGACAATGAGGTACAACCTCGTCATGTTCGTCTAGCAGTAAAACTGCTGAAAACTTCCATAATAAGTGTGGAATCCAGTGAGATTGATCTGTCTGAGTTTCAAGAACAAAACCACGATGATGGTGCAGGTGGTGGCAATGAAAATGATAATAATAGAGATGCTAATTATCAAGAGGGGAATGATACAGCGCAGCAAGCTGCTGGAAATGGTAATGATCAAGTGGGAAACGATGCAGCTCAGCAAGCCACTGGAAATAATGGAAATCCAGCAGATGGATCTAAACCCCAAGTGAGAAAACTCATTATGAGTGATGAATATTATCAGAGAGTTACCAGCGCCCTTATTATGCGTCTAAGACAGCATGAAGAGGCTGTTGTGCAAGGAGACGGTTTGTCTGGGATGAGGCAAAAAGATTTGATTCAATGGTACGTAGACCAACAAAATGAGAGAAACAACTACAGTTCGATGGATGAGGTGCAAGCTGAAATTTCCAAAATTAAAGCTATTATAGAGAGCTTAATTCGGAGAGAGGGCCATTTGATAGTTGTAGATAATGGGGAAGCCGCGGCAGCAGCAGCAGAACCCCCAGGCGCACCAAGAAATTACCGAATTTTAGCAGTGGCTCCTAATTATGTCATTGATTGA
>Glyma15g16570.1 sequence type=predicted peptide gene model=Glyma15g16570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEAYGGFMVDEKAVRVENAFLDFLKSFKSSSQRNELYYEAEIELMKSNESNTMFIDFDHVIRFSDLLQQTISDEYLRFEPYLKNACKRFVMDLKPSLVSDDSPDKDINIAFYNMPIVKRLRELGTSEIGRLVSVTGVVTRTSEVRPELLHGTFKCLECGGVIKNVEQQFKYTEPTICANATCSNRTRWVLLRQESKFADWQRVRMQETSKEIPAGSLPRSLDIILRHEIVEHARAGDTVIFTGTVVVIPDIMALASPGERSECRRDASQRKGSTAGNEGVSGLKALGVRDLNYRLAFIANSAQICDGRREIDIRNRKKDVDEDNQQFTDQELEEIKRMRSTPDFFTKLVESIAPTVFGHPDIKRAILLMLLGGVHKFTHEGINLRGDINVCVVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREGALAPAFTTAELKRYIAYAKTLKPKLSPDARKLLVDSYVALRRGDTNPGSRVAYRMTVRQLEALIRLSEAIARCHLDNEVQPRHVRLAVKLLKTSIISVESSEIDLSEFQEQNHDDGAGGGNENDNNRDANYQEGNDTAQQAAGNGNDQVGNDAAQQATGNNGNPADGSKPQVRKLIMSDEYYQRVTSALIMRLRQHEEAVVQGDGLSGMRQKDLIQWYVDQQNERNNYSSMDEVQAEISKIKAIIESLIRREGHLIVVDNGEAAAAAAEPPGAPRNYRILAVAPNYVID*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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