Glyma15g16430 - SoyBase

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Report for Sequence Feature Glyma15g16430

Feature Type:	gene_model
Chromosome:	Gm15
Start:	12727341
stop:	12730022
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g16430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G07900	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial transcription termination factor family protein \| chr5:2520188-2521405 FORWARD LENGTH=405	SoyBase	E_val: 2.00E-51	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR13068	Panther	CGI-12 PROTEIN-RELATED	JGI		ISS
PTHR13068:SF3	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF02536	PFAM	mTERF	JGI		ISS
UniRef100_D7M0N3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial transcription termination factor family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M0N3_ARALL	SoyBase	E_val: 5.00E-49	ISS
UniRef100_I1MGR0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGR0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g16430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g16430 not represented in the dataset	Glyma15g16430 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g16430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g153600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g16430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g16430

Limit To All Plant Sequences

>Glyma15g16430.3   sequence type=transcript   gene model=Glyma15g16430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTAAAGGTAAGCCCCCTCCACCGTATGTTTGAACACGCTGATGTTTGAATCATAGAATTCTTCTTTGAACACCGTTCTGATGTTTCGTTCCCAACGCTTCAAACCCCTTCTCTATCTGAAGGGACTCACAACACCACCATCACTTCAAACCCCGAAACCCAATTCTCCTTTTCCCTCAACACTCTTTCCGAAACACATCTCACTCACTTCACAGCAACACTCATTTGCGGCTTCCTACCTCGTAAACACCTTCGGCCTCTCCCCGGAAACCGCTCTCAAGGTCTCCGAGCGCGTTCGCTTCGACACCCCTCAGAAGCCTGACTCAGTGATCGCGTTCTTCACAAGCAATGGATTCACCGTTCCCCAGATAAAAAGCATCGTCAAAAGGGTACCCGACGTGCTCAATTGCAACCCCCACAAGAGGCTCTGGCCAAAGTTCCAATTTTTACTCTCAAAAGGTGCTTCTTATCCCTCTGACATCGTTCACCTCGTGAATAGGTGCCCCAGAATCATCAATTCCAGCCTCGAGAAAAACGTGATCCCCACCTTCGAATTGGACTCCAGCATCACCTATTTGTTCCGTAGGAGGGCTTCTATACTCTTGTCTAAGGACTTGAGGAAGAACATTGATGAAGTTAAGGAATTGGGGTTTGATCCTTCCAAGATGAGTTTTGTGATGGCCTTGCACGCCAAAATGAGTGTCCCGAAATCGAGGTGGGATGCCAAAGTTGATGCCTGCAAGAGCTGGGGATGGTCTGAGGAAATGGTTCTTGATGCCTTCAGGAAGCATCCCATCTTTATGTTAGGGTCCAAAGATAAGATTAATGAGGTGATGAGATTTTGGGTTGATCAGTTAGGTTGGGACCCTTTGGCCCTCGCCAAAATGCCGAAGATTTTTGGATATAGTTTGAAGGGAAGGATCATTCCGAGGGGTTTGGTTGTCCGATATTTGATCGGGAAAGGTTTGAGAAAGAAGAGTGCCAGCTTGTTAACCCCATTTTCTGCTTCTGAAAGGTTGTTTCTTGAAAATTATGTGATGCGTTTTAAGGAGGAAACACATCAACTATCAAAGGTTTATGTGGAAAAATGAGTTTCCAAGAAAACAGGGAGGATGGTGTAGCATCTGGCAGTTAGCAAAACGGAAGAGTACAATTTTCTTAGATGTAAAGGAGAGATAGATGAAGATACAAATCAAAGTTCCTTAATCATTGTGGAATTTAGAAAAAATCAAGGTCCATGTTTCATTTATTCATTGCTGCTGGAAGTTCAATTGAAGACAAAGTTTGAGTGATTGAACAGTTGTTTCTCAGATGTTTAGCAGGGAATATATTAAGTGATAGCTTCTGGTTACAGCATTATACATTAGGTAGAACTATTCACTTTTGTAGTTTGACGAGGAACACAAATGAATATTTAAGTGTTGCATTATGATAGATGCATCAAACGATAAGAATTTACTTTTTAACTTTATATGGTTGAGATGTTGAGTTGAGTTATAATTTAAGCTTTTAGATGTAGGAGCTCATAAACTGAGTTATATGCCAGGGTTAATTCTAGCTTTATTTTCTGAATTCTAAAAATTTATTTAAATATTGATGGAAAGTGGTAATGCATATTTTTGTTATAGTAGAGGTGTAGCTTTGGGGTGAGCCATGGTGCAACGACAAACTTTTGCCTCGTGACTTGGTGTTCAAGATTCTAGTTGTAGCAATAGCCCCTTTGCTTATGGGATTATGGTTTCATACATTTTACTCCTTCCATTCCCTCACAACAGTAGGAGTTTGGTGCAATAGGTCATCATTTACAACGAATGTGCAAACATGAGTAGGAACTAGGGATAAGCCAGTGGGAAATTGAACGCCTTGTCTTAGAGATCAAGACCGATGCCATGATCATAAGATTTTTGTCTTGTGAAAAGTTTGTGAATCTTTTTATGAGGATTTTTTTCATCAATGTAACCTGTTTGAGGAAACAATGTATGAATGTGAATCTAAAAGAGGCATGGAACTGGGAGACCATCGGCTTGTATTGTTCATAAACATTTTCATTGTTTAATAAAAATTTGGTTAGTAACTTCACCCT

>Glyma15g16430.4   sequence type=transcript   gene model=Glyma15g16430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTAAAGGTAAGCCCCCTCCACCGTATGTTTGAACACGCTGATGTTTGAATCATAGAATTCTTCTTTGAACACCGTTCTGATGTTTCGTTCCCAACGCTTCAAACCCCTTCTCTATCTGAAGGGACTCACAACACCACCATCACTTCAAACCCCGAAACCCAATTCTCCTTTTCCCTCAACACTCTTTCCGAAACACATCTCACTCACTTCACAGCAACACTCATTTGCGGCTTCCTACCTCGTAAACACCTTCGGCCTCTCCCCGGAAACCGCTCTCAAGGTCTCCGAGCGCGTTCGCTTCGACACCCCTCAGAAGCCTGACTCAGTGATCGCGTTCTTCACAAGCAATGGATTCACCGTTCCCCAGATAAAAAGCATCGTCAAAAGGGTACCCGACGTGCTCAATTGCAACCCCCACAAGAGGCTCTGGCCAAAGTTCCAATTTTTACTCTCAAAAGGTGCTTCTTATCCCTCTGACATCGTTCACCTCGTGAATAGGTGCCCCAGAATCATCAATTCCAGCCTCGAGAAAAACGTGATCCCCACCTTCGAATTGGACTCCAGCATCACCTATTTGTTCCGTAGGAGGGCTTCTATACTCTTGTCTAAGGACTTGAGGAAGAACATTGATGAAGTTAAGGAATTGGGGTTTGATCCTTCCAAGATGAGTTTTGTGATGGCCTTGCACGCCAAAATGAGTGTCCCGAAATCGAGGTGGGATGCCAAAGTTGATGCCTGCAAGAGCTGGGGATGGTCTGAGGAAATGGTTCTTGATGCCTTCAGGAAGCATCCCATCTTTATGTTAGGGTCCAAAGATAAGATTAATGAGGTGATGAGATTTTGGGTTGATCAGTTAGGTTGGGACCCTTTGGCCCTCGCCAAAATGCCGAAGATTTTTGGATATAGTTTGAAGGGAAGGATCATTCCGAGGGGTTTGGTTGTCCGATATTTGATCGGGAAAGGTTTGAGAAAGAAGAGTGCCAGCTTGTTAACCCCATTTTCTGCTTCTGAAAGGTTGTTTCTTGAAAATTATGTGATGCGTTTTAAGGAGGAAACACATCAACTATCAAAGGTTTATGTGGAAAAATGAGTTTCCAAGAAAACAGGGAGGATGGTGTAGCATCTGGCAGTTAGCAAAACGGAAGAGTACAATTTTTAGAGGTGTAGCTTTGGGGTGAGCCATGGTGCAACGACAAACTTTTGCCTCGTGACTTGGTGTTCAAGATTCTAGTTGTAGCAATAGCCCCTTTGCTTATGGGATTATGGTTTCATACATTTTACTCCTTCCATTCCCTCACAACAGTAGGAGTTTGGTGCAATAGGTCATCATTTACAACGAATGTGCAAACATGAGTAGGAACTAGGGATAAGCCAGTGGGAAATTGAACGCCTTGTCTTAGAGATCAAGACCGATGCCATGATCATAAGATTTTTGTCTTGTGAAAAGTTTGTGAATCTTTTTATGAGGATTTTTTTCATCAATGTAACCTGTTTGAGGAAACAATGTATGAATGTGAATCTAAAAGAGGCATGGAACTGGGAGACCATCGGCTTGTATTGTTCATAAACATTTTCATTGTTTAATAAAAATTTGGTTAGTAACTTCACCCT

Coding sequences of Glyma15g16430

Limit To All Plant Sequences

>Glyma15g16430.2   sequence type=CDS   gene model=Glyma15g16430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCGTTCCCAACGCTTCAAACCCCTTCTCTATCTGAAGGGACTCACAACACCACCATCACTTCAAACCCCGAAACCCAATTCTCCTTTTCCCTCAACACTCTTTCCGAAACACATCTCACTCACTTCACAGCAACACTCATTTGCGGCTTCCTACCTCGTAAACACCTTCGGCCTCTCCCCGGAAACCGCTCTCAAGGTCTCCGAGCGCGTTCGCTTCGACACCCCTCAGAAGCCTGACTCAGTGATCGCGTTCTTCACAAGCAATGGATTCACCGTTCCCCAGATAAAAAGCATCGTCAAAAGGGTACCCGACGTGCTCAATTGCAACCCCCACAAGAGGCTCTGGCCAAAGTTCCAATTTTTACTCTCAAAAGGTGCTTCTTATCCCTCTGACATCGTTCACCTCGTGAATAGGTGCCCCAGAATCATCAATTCCAGCCTCGAGAAAAACGTGATCCCCACCTTCGAATTGGACTCCAGCATCACCTATTTGTTCCGTAGGAGGGCTTCTATACTCTTGTCTAAGGACTTGAGGAAGAACATTGATGAAGTTAAGGAATTGGGGTTTGATCCTTCCAAGATGAGTTTTGTGATGGCCTTGCACGCCAAAATGAGTGTCCCGAAATCGAGGTGGGATGCCAAAGTTGATGCCTGCAAGAGCTGGGGATGGTCTGAGGAAATGGTTCTTGATGCCTTCAGGAAGCATCCCATCTTTATGTTAGGGTCCAAAGATAAGATTAATGAGGTGATGAGATTTTGGGTTGATCAGTTAGGTTGGGACCCTTTGGCCCTCGCCAAAATGCCGAAGATTTTTGGATATAGTTTGAAGGGAAGGATCATTCCGAGGGGTTTGGTTGTCCGATATTTGATCGGGAAAGGTTTGAGAAAGAAGAGTGCCAGCTTGTTAACCCCATTTTCTGCTTCTGAAAGGTTGTTTCTTGAAAATTATGTGATGCGTTTTAAGGAGGAAACACATCAACTATCAAAGGTTTATGTGGAAAAATGA

>Glyma15g16430.3   sequence type=CDS   gene model=Glyma15g16430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCGTTCCCAACGCTTCAAACCCCTTCTCTATCTGAAGGGACTCACAACACCACCATCACTTCAAACCCCGAAACCCAATTCTCCTTTTCCCTCAACACTCTTTCCGAAACACATCTCACTCACTTCACAGCAACACTCATTTGCGGCTTCCTACCTCGTAAACACCTTCGGCCTCTCCCCGGAAACCGCTCTCAAGGTCTCCGAGCGCGTTCGCTTCGACACCCCTCAGAAGCCTGACTCAGTGATCGCGTTCTTCACAAGCAATGGATTCACCGTTCCCCAGATAAAAAGCATCGTCAAAAGGGTACCCGACGTGCTCAATTGCAACCCCCACAAGAGGCTCTGGCCAAAGTTCCAATTTTTACTCTCAAAAGGTGCTTCTTATCCCTCTGACATCGTTCACCTCGTGAATAGGTGCCCCAGAATCATCAATTCCAGCCTCGAGAAAAACGTGATCCCCACCTTCGAATTGGACTCCAGCATCACCTATTTGTTCCGTAGGAGGGCTTCTATACTCTTGTCTAAGGACTTGAGGAAGAACATTGATGAAGTTAAGGAATTGGGGTTTGATCCTTCCAAGATGAGTTTTGTGATGGCCTTGCACGCCAAAATGAGTGTCCCGAAATCGAGGTGGGATGCCAAAGTTGATGCCTGCAAGAGCTGGGGATGGTCTGAGGAAATGGTTCTTGATGCCTTCAGGAAGCATCCCATCTTTATGTTAGGGTCCAAAGATAAGATTAATGAGGTGATGAGATTTTGGGTTGATCAGTTAGGTTGGGACCCTTTGGCCCTCGCCAAAATGCCGAAGATTTTTGGATATAGTTTGAAGGGAAGGATCATTCCGAGGGGTTTGGTTGTCCGATATTTGATCGGGAAAGGTTTGAGAAAGAAGAGTGCCAGCTTGTTAACCCCATTTTCTGCTTCTGAAAGGTTGTTTCTTGAAAATTATGTGATGCGTTTTAAGGAGGAAACACATCAACTATCAAAGGTTTATGTGGAAAAATGA

>Glyma15g16430.4   sequence type=CDS   gene model=Glyma15g16430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCGTTCCCAACGCTTCAAACCCCTTCTCTATCTGAAGGGACTCACAACACCACCATCACTTCAAACCCCGAAACCCAATTCTCCTTTTCCCTCAACACTCTTTCCGAAACACATCTCACTCACTTCACAGCAACACTCATTTGCGGCTTCCTACCTCGTAAACACCTTCGGCCTCTCCCCGGAAACCGCTCTCAAGGTCTCCGAGCGCGTTCGCTTCGACACCCCTCAGAAGCCTGACTCAGTGATCGCGTTCTTCACAAGCAATGGATTCACCGTTCCCCAGATAAAAAGCATCGTCAAAAGGGTACCCGACGTGCTCAATTGCAACCCCCACAAGAGGCTCTGGCCAAAGTTCCAATTTTTACTCTCAAAAGGTGCTTCTTATCCCTCTGACATCGTTCACCTCGTGAATAGGTGCCCCAGAATCATCAATTCCAGCCTCGAGAAAAACGTGATCCCCACCTTCGAATTGGACTCCAGCATCACCTATTTGTTCCGTAGGAGGGCTTCTATACTCTTGTCTAAGGACTTGAGGAAGAACATTGATGAAGTTAAGGAATTGGGGTTTGATCCTTCCAAGATGAGTTTTGTGATGGCCTTGCACGCCAAAATGAGTGTCCCGAAATCGAGGTGGGATGCCAAAGTTGATGCCTGCAAGAGCTGGGGATGGTCTGAGGAAATGGTTCTTGATGCCTTCAGGAAGCATCCCATCTTTATGTTAGGGTCCAAAGATAAGATTAATGAGGTGATGAGATTTTGGGTTGATCAGTTAGGTTGGGACCCTTTGGCCCTCGCCAAAATGCCGAAGATTTTTGGATATAGTTTGAAGGGAAGGATCATTCCGAGGGGTTTGGTTGTCCGATATTTGATCGGGAAAGGTTTGAGAAAGAAGAGTGCCAGCTTGTTAACCCCATTTTCTGCTTCTGAAAGGTTGTTTCTTGAAAATTATGTGATGCGTTTTAAGGAGGAAACACATCAACTATCAAAGGTTTATGTGGAAAAATGA

Predicted protein sequences of Glyma15g16430

Limit To All Plant Sequences

>Glyma15g16430.2   sequence type=predicted peptide   gene model=Glyma15g16430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFRSQRFKPLLYLKGLTTPPSLQTPKPNSPFPSTLFPKHISLTSQQHSFAASYLVNTFGLSPETALKVSERVRFDTPQKPDSVIAFFTSNGFTVPQIKSIVKRVPDVLNCNPHKRLWPKFQFLLSKGASYPSDIVHLVNRCPRIINSSLEKNVIPTFELDSSITYLFRRRASILLSKDLRKNIDEVKELGFDPSKMSFVMALHAKMSVPKSRWDAKVDACKSWGWSEEMVLDAFRKHPIFMLGSKDKINEVMRFWVDQLGWDPLALAKMPKIFGYSLKGRIIPRGLVVRYLIGKGLRKKSASLLTPFSASERLFLENYVMRFKEETHQLSKVYVEK*

>Glyma15g16430.3   sequence type=predicted peptide   gene model=Glyma15g16430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFRSQRFKPLLYLKGLTTPPSLQTPKPNSPFPSTLFPKHISLTSQQHSFAASYLVNTFGLSPETALKVSERVRFDTPQKPDSVIAFFTSNGFTVPQIKSIVKRVPDVLNCNPHKRLWPKFQFLLSKGASYPSDIVHLVNRCPRIINSSLEKNVIPTFELDSSITYLFRRRASILLSKDLRKNIDEVKELGFDPSKMSFVMALHAKMSVPKSRWDAKVDACKSWGWSEEMVLDAFRKHPIFMLGSKDKINEVMRFWVDQLGWDPLALAKMPKIFGYSLKGRIIPRGLVVRYLIGKGLRKKSASLLTPFSASERLFLENYVMRFKEETHQLSKVYVEK*

>Glyma15g16430.4   sequence type=predicted peptide   gene model=Glyma15g16430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFRSQRFKPLLYLKGLTTPPSLQTPKPNSPFPSTLFPKHISLTSQQHSFAASYLVNTFGLSPETALKVSERVRFDTPQKPDSVIAFFTSNGFTVPQIKSIVKRVPDVLNCNPHKRLWPKFQFLLSKGASYPSDIVHLVNRCPRIINSSLEKNVIPTFELDSSITYLFRRRASILLSKDLRKNIDEVKELGFDPSKMSFVMALHAKMSVPKSRWDAKVDACKSWGWSEEMVLDAFRKHPIFMLGSKDKINEVMRFWVDQLGWDPLALAKMPKIFGYSLKGRIIPRGLVVRYLIGKGLRKKSASLLTPFSASERLFLENYVMRFKEETHQLSKVYVEK*

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