SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G21400 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7534824-7536293 REVERSE LENGTH=188 | SoyBase | E_val: 2.00E-61 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_C6T5G1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T5G1_SOYBN | SoyBase | E_val: 1.00E-139 | ISS |
| UniRef100_Q2QP64 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QP64_ORYSJ | SoyBase | E_val: 6.00E-38 | ISS |
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Glyma15g16380 not represented in the dataset |
Glyma15g16380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g05120 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g153100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g16380.1 sequence type=CDS gene model=Glyma15g16380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTCAGGCATTTCGTCGAGCATCTGGAAGAATCCGAGCAGCATCCGAAGCTGACACGTCATCCTTCTCCAAGTCGAAGACCGCCGTCGATCGCCAACCTCCGCCCAATGCTGCCGCTGACAAGGCGGCGCAGATCCCAAAAGCCGCCGAACAAGACGTACTTCACACCGATGATCGTCCTAGAGTTAATACGGACAACATCCTGGAAGAAAGAGATCCCAAATTTGATGCTATGCTTGGTCAAATGGTTGGTAGAATTACATCAAAGCCTGGGGGAAAACCTGAGATGGGTGAGGCCTTTGTGGTTGAGAAGTTTAATAGGCCCATGCCCAAATTGCGAAACACAAAACCAGATTTTGGCCGTAATGAGGAGAGGCCAGTTCCTGCTGGCACTTTGAATGTAGCACAGTTGCGTCATATCATCCTTTTGCATGAAGGCAAGGCTGATGATTACAATGGGCGTATGGATGCCCACCAGATTGCTGAAAAATTTCGGGTCAATGTTGTTCAGATTCAGACAATCTTGCAATTCTTATCGCTACCTCCAGAAAATAGCAGTAAAGACAAGAACAAAGCACCAAGATGA
>Glyma15g16380.1 sequence type=predicted peptide gene model=Glyma15g16380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGQAFRRASGRIRAASEADTSSFSKSKTAVDRQPPPNAAADKAAQIPKAAEQDVLHTDDRPRVNTDNILEERDPKFDAMLGQMVGRITSKPGGKPEMGEAFVVEKFNRPMPKLRNTKPDFGRNEERPVPAGTLNVAQLRHIILLHEGKADDYNGRMDAHQIAEKFRVNVVQIQTILQFLSLPPENSSKDKNKAPR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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